View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1569_low_18 (Length: 256)
Name: NF1569_low_18
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1569_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 2687915 - 2688142
Alignment:
| Q |
13 |
aaaaccaaacagcaaggcaaatgctatgggtctgaaatctaataaatcacatcaaaattcaagcccctagcgatccctaaaccaacccgaaacagtccca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2687915 |
aaaaccaaacagcaaggcaaatgctatgggtctgaaatctaataaatcacatcaaaattcaagcccctagcgatccctaaaccaacccgaaacagtccca |
2688014 |
T |
|
| Q |
113 |
gcacatctcccaaaaccgaacagcggctccagaagccaaaaaaccaacaatcagctgcgcagcagacaggcagcaccacctacacctgctgtactgtcat |
212 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2688015 |
gcacatctcccaaaaccaaacagcagctccagaagccaaaaaaccaacaatcagctgcgcagcagacaggcagcagcacctacacctgctgtactgtcat |
2688114 |
T |
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| Q |
213 |
gatagcaacactaaacccagcaaaaatg |
240 |
Q |
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|| ||||||||||||||||||||||||| |
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| T |
2688115 |
gacagcaacactaaacccagcaaaaatg |
2688142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 52421986 - 52422091
Alignment:
| Q |
21 |
acagcaaggcaaatgctatgggtctgaaatctaataaatcacatcaaaattcaagcccctagcgatccctaaaccaacccgaaacagtcccagcacatct |
120 |
Q |
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|||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||||| || |||||||||||||| ||||| |||| |||| || |
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| T |
52421986 |
acagcaaggcaacagctatgggtctgaaatctaataaaactaaccaaaattcaagcccctagctatgcctaaaccaacccgcaacagccccatcacagct |
52422085 |
T |
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| Q |
121 |
cccaaa |
126 |
Q |
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|||||| |
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| T |
52422086 |
cccaaa |
52422091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 42851708 - 42851821
Alignment:
| Q |
13 |
aaaaccaaacagcaaggcaaatgctatgggtctgaaatctaataaatcacatcaaaattcaagcccctagcgatccctaaaccaacccgaaacagtccca |
112 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||| | | |||||||||||| |||||| || |||||||||||||| ||||| |||| |
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| T |
42851708 |
aaaaccaatcagcaaggcaacaactatgggtctgaaatctaataaaactaaccaaaattcaagctcctagctatgcctaaaccaacccgcaacagcccca |
42851807 |
T |
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| Q |
113 |
gcacatctcccaaa |
126 |
Q |
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|||| |||||||| |
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| T |
42851808 |
tcacagctcccaaa |
42851821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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