View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1569_low_2 (Length: 751)
Name: NF1569_low_2
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1569_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 16479679 - 16479259
Alignment:
| Q |
1 |
ataaacttttcattgcctatatatatcctagtacacataggttgagtttgaatttgtattagataaactattcattgccacaaaccattgttttagtctt |
100 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16479679 |
ataaacttttccttgcctagatatatcctagtacacataggttaagtttgaatttgtattagataaactattcattgccacaaaccattgttttagtctt |
16479580 |
T |
|
| Q |
101 |
caaattcctttaattcattgaattagataaattatttggatgtagcttatcatgacatctttgctgtcatggagctaagggtgcacccttttataagttt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16479579 |
caaattcctttgattcattgaattagataaattatttggatgtagcttatcatgacatctttgctgtcatggagctaaaggtgcacccttttataagttt |
16479480 |
T |
|
| Q |
201 |
taagctaattttatgaccatgagattagtacaatgtggaccaagaaaactcacaatttgttgcttcaattgtatctttaacttcttagccttccctctaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16479479 |
taagctaattttatgaccatgagattagtataatgtggaccaagaaaactcacaatttgttgcttcaattgtatctttaacttcttagccttccctctaa |
16479380 |
T |
|
| Q |
301 |
tcaatggaaatttcattcctagctctagaaggtcgttagccttcatgtagggttgatcctagtcaaattttaatggtaatcagattgataataatgatca |
400 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16479379 |
tcaatggaaatttcattactagctctagaaggtcgttagccttcatgtagggttgatcctagtcaaattttaatggtaatcagattgataataatgatca |
16479280 |
T |
|
| Q |
401 |
tcttacagccatggtatattg |
421 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
16479279 |
tcttagagccatggtatattg |
16479259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 416 - 745
Target Start/End: Complemental strand, 16479180 - 16478851
Alignment:
| Q |
416 |
atattgaaaataagttcagtgagatcatctctgaagaggaagttaatgtggttttgtttggtaaaagagatgattagggttaaagagatgattgagtgaa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16479180 |
atattgaaaataagttcagtgagatcatctctgaagaggaagttaatgtggttttgtttggtaaaagagatgattagggttaaagagatgattgagtgaa |
16479081 |
T |
|
| Q |
516 |
agatatgattgagtttgttaagaatttatggaggaatccattttgataacctgagtgtaaatacttctgatatcagcctgatttctaaagtatctaagcc |
615 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16479080 |
agatatgattgactttgttaagaatttatggaggaatccattttgataacctgagtgtaaatacttctgatatcagcctgatttctaaagtatctaagcc |
16478981 |
T |
|
| Q |
616 |
taagcatgctgtgactcatttaagatcaatttccttgtgttgttataagttcttgactaaaattaaggtgaacatgcttaatcttcttatgtctgaggtt |
715 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16478980 |
taagcatgctgtgactcatttaagatccatttccttgtgttgttataagttcttgactaaaactaaggtgaacatgcttgatcttcttatgtctgaggtt |
16478881 |
T |
|
| Q |
716 |
gtgtccacttgtcaaacacgtttcatttct |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
16478880 |
gtgtccacttgtcaaacacgtttcatttct |
16478851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University