View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1569_low_27 (Length: 215)
Name: NF1569_low_27
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1569_low_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 2605828 - 2606005
Alignment:
| Q |
19 |
ttggaagtttctctgacacaataggtgaatgcatttttgttatctaaagtttgctacattttggctaaagtattccaacatttaatgtgaacagtatttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2605828 |
ttggaagtttctctgacacaataggtgaatgcatttttgttatctaaagtttgctacattttggctaaagtattccaacatttaatgtgaacagtatttt |
2605927 |
T |
|
| Q |
119 |
tatttagataagagatttcaatattgcaaaaagagaggaggacataagtgcttatgcaggttatgtgggtaagattga |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2605928 |
tatttagataagagatttcaatattgcaaaaagagaggaggacataagtgcttatgcaggttatgtgggtaagattga |
2606005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 39160568 - 39160630
Alignment:
| Q |
132 |
gatttcaatattgcaaaaagagaggaggacataagtgcttatgcaggttatgtgggtaagatt |
194 |
Q |
| |
|
||||||||||||||| |||| ||||| || ||||| |||||||| |||||||| ||||||||| |
|
|
| T |
39160568 |
gatttcaatattgcagaaagcgaggaagatataagcgcttatgctggttatgtaggtaagatt |
39160630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 54 - 194
Target Start/End: Complemental strand, 26371461 - 26371322
Alignment:
| Q |
54 |
tttgttatctaaagtttgctacattttggctaaagtattccaacatttaatgtgaacagtatttttatttagataagagatttcaatattgcaaaaagag |
153 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | |
|
|
| T |
26371461 |
tttgttatctaaagtt-gctacattttggctaaggtattccaacatttaatgtgaacagtatttttatttagattagagatttcaatattgcagaaaggg |
26371363 |
T |
|
| Q |
154 |
aggaggacataagtgcttatgcaggttatgtgggtaagatt |
194 |
Q |
| |
|
| |||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
26371362 |
aagaggacataagtgcttatgctggttatatgggtaagatt |
26371322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 31828291 - 31828347
Alignment:
| Q |
138 |
aatattgcaaaaagagaggaggacataagtgcttatgcaggttatgtgggtaagatt |
194 |
Q |
| |
|
|||||||||||||| ||||| || |||||||| ||||| | |||||||||||||||| |
|
|
| T |
31828291 |
aatattgcaaaaagtgaggaagatataagtgcctatgctgattatgtgggtaagatt |
31828347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University