View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1569_low_28 (Length: 202)
Name: NF1569_low_28
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1569_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 26048938 - 26048758
Alignment:
| Q |
19 |
aataatgttcgctattcggctcaacgccataatccctatgcatcttcatnnnnnnncacaacgcctcatcatccaacccagcatgactacaagctttcaa |
118 |
Q |
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| T |
26048938 |
aataatgttcgctattcggctcaacgccataatccctatgcatcttcatgaaaaaacacaacgcctcatcatccaacccagcatgactacaagctttcaa |
26048839 |
T |
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| Q |
119 |
aacagcaagaaaagtaatcccatctggcttcacgcctgaaacttccatttcttgaaaaaactccaatgcttcctttgcttc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26048838 |
aacagcaagaaaagtaatcccatctggcttcacgcctgaaacttccatttcttgaaaaaactccaatgcttcctttgcttc |
26048758 |
T |
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