View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1569_low_3 (Length: 468)
Name: NF1569_low_3
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1569_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Original strand, 38326362 - 38326801
Alignment:
| Q |
18 |
ttataatggttctcaaatccttttgaatgattccaagaagtgcttaactgctattggtgaagggcttccagtagctatttctgatgattacgaaaacaag |
117 |
Q |
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| T |
38326362 |
ttataatggttctcaaatccttttgaatgattccaagaagtgcttaactgctattggtgaagggcttccagtagctatttctgatgattacgaaaacaag |
38326461 |
T |
|
| Q |
118 |
aacagttcatggaaatctgaatcactttcgagacttcatttggctactgtggatcaaaatgggaaacatctttgcttgcataaggattataactcatctg |
217 |
Q |
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| T |
38326462 |
aacagttcatggaaatctgaatcactttctagacttcatttggctactgtggatcaaaatgggaaacatctttgcttgcataaggattataactcatctt |
38326561 |
T |
|
| Q |
218 |
ttgttgtgacttcaaaatgtatctgcataaatgatgattctctttgtcttgatgatccacagagccaatggttccaacttgttgcaaccaatgtttagtt |
317 |
Q |
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| T |
38326562 |
ttgttgtgacttcaaaatgtatctgcataaatgatgattctctttgtcttgatgatccacagagccaatggttccaacttgttgcaaccaatgtttagtt |
38326661 |
T |
|
| Q |
318 |
tgagtagctagttgctctatcatattatctttatagtttgtctaattgaattgttttataattatagaacttttaatatgataatcttgttgcaatgtta |
417 |
Q |
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| T |
38326662 |
tgagtaactagttgctctatcatattatctttatagtttgtctaattgaattgttttataattatagaacttttaatatgataatcttgttgcaatgtta |
38326761 |
T |
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| Q |
418 |
atgttttgtaaccttctattgtatttaactgtagtttcat |
457 |
Q |
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| T |
38326762 |
atgttttgtaaccttctattgtatttaagtgtagtttcat |
38326801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 10766215 - 10766522
Alignment:
| Q |
18 |
ttataatggttctcaaatccttttgaatgattccaagaagtgcttaactgctattggtgaagggcttccagtagctatttctgatgattacgaaaacaag |
117 |
Q |
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|||||| |||||||||||| ||||||| || | ||||||||||||||| ||||||||||||||||| | |||||||||||| ||||| |||| |
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| T |
10766215 |
ttataagggttctcaaatctttttgaaagagagtcaaaagtgcttaactgcttccggtgaagggcttccagtttccgtttctgatgattgcgaaagcaag |
10766314 |
T |
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| Q |
118 |
aacagttcatggaaatctgaatcactttcgagacttcatttggctactgtggatcaaaatgggaaacatc---tttgcttgcataaggattataactcat |
214 |
Q |
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| T |
10766315 |
aatagttcatggaaaactgcatcaccttctaaacttcatttggctactgttaatcaagatggcaaacaacaactttgcttgcaaaaggatactaattcat |
10766414 |
T |
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| Q |
215 |
ctgttgttgtgacttcaaaatgtatctgcataaatgatgattctctttgtcttgatgatccacagagccaatggttccaacttgttgcaaccaatgttta |
314 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
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| T |
10766415 |
ctgctgttgtgacttcaaaatgtatctgcatacatgatgattctctttgtcttgatgatcctcagagccaatggtttcaacttgttgccaccaatgttta |
10766514 |
T |
|
| Q |
315 |
gtttgagt |
322 |
Q |
| |
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|||||||| |
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| T |
10766515 |
gtttgagt |
10766522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 53 - 297
Target Start/End: Original strand, 2105392 - 2105643
Alignment:
| Q |
53 |
agaagtgcttaactgctattggtgaagggcttccagta-gctatttctgatgattacgaaaacaagaacagttcatggaaatctgaatcactttc---ga |
148 |
Q |
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|||||||||||||||||| ||||||| ||||| || | | | |||||||||||| || ||||||| || ||||||||||| ||||||||| | |
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| T |
2105392 |
agaagtgcttaactgctactggtgaatggctttcaagatgttgtttctgatgattgtcttaataagaacaattaatggaaatctgtatcactttctatgc |
2105491 |
T |
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| Q |
149 |
gacttcatttggctactgtggatcaaaatgggaaacatc-tttgcttgcataaggattataactcatctgttgttgtgacttcaaaatgtatctgcataa |
247 |
Q |
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||||||||||||||| || ||||||| |||||||| | ||| |||||||||||||| |||||||||| |||||| ||| |||||||||||||||| | |
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| T |
2105492 |
ttcttcatttggctactatgaatcaaaacgggaaacaacttttacttgcataaggattccaactcatctgctgttgtaactacaaaatgtatctgcatta |
2105591 |
T |
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| Q |
248 |
at----gatgattctctttgtcttgatgatccacagagccaatggttccaactt |
297 |
Q |
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|| |||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
2105592 |
atgatggatgattctc--tgtcttgatgatccatagagccaatggttccaactt |
2105643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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