View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1569_low_4 (Length: 457)
Name: NF1569_low_4
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1569_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 12 - 438
Target Start/End: Original strand, 42374796 - 42375225
Alignment:
| Q |
12 |
atcatcaatccatatgcaaatgttcaatttctttagttcaaatttagagtttgattttgtacattgtacgtgtaaaatacttttacactgtaattcttga |
111 |
Q |
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| T |
42374796 |
atcatcaatccatatgcaaatgttcaatttctttagtacaaatttagagtttgattttgtacattgtacgtgtaaaatacttttacactataattcttga |
42374895 |
T |
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| Q |
112 |
taaac---aactaatgacatgttattaagacatgacagacccgcacgagagtttcttcattggattctcaaaaatctgtggggttaaatacaaagacaca |
208 |
Q |
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| T |
42374896 |
tatactacaactaatgacatgttattaagacatgacagacccgcacgagagtttcttcattggattctcaaaaatctgtggggttgaatacaaagacaca |
42374995 |
T |
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| Q |
209 |
tgcatgtagccatacaactgacacaatgatttcattttcttgattaaacttttgttttgttctaaacaaacaaatccatccatcaaagcactcttgtgtt |
308 |
Q |
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| T |
42374996 |
tgcatgtagccatacaactgacacaatgatttcattttcttgattaaacttttgttttgttctaaacaaacaaatccatccatcaaagcactcttgtgtt |
42375095 |
T |
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| Q |
309 |
gacataaattaaaaacattataaaactaactgacttaacggcagctacatctttgctgaaataaatctcgaccctctaggttaattagattctaaagcac |
408 |
Q |
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| T |
42375096 |
gacataaattaaaaactgtataaaactaactgacttaacggcagctacatctttgctgaaataaatctcgaccctctaggttaattagattctaaagcac |
42375195 |
T |
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| Q |
409 |
attaaaagattaatttgttgtcaatcgcca |
438 |
Q |
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| T |
42375196 |
attaaaagattaatttgttgtcattcgcca |
42375225 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 24572923 - 24572960
Alignment:
| Q |
140 |
atgacagacccgcacgagagtttcttcattggattctc |
177 |
Q |
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| T |
24572923 |
atgacagacccgcacgagagttccttcattggattctc |
24572960 |
T |
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