View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1569_low_5 (Length: 421)

Name: NF1569_low_5
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1569_low_5
NF1569_low_5
[»] scaffold0391 (1 HSPs)
scaffold0391 (17-408)||(12403-12794)
[»] chr8 (10 HSPs)
chr8 (49-165)||(33975484-33975600)
chr8 (271-366)||(33960399-33960494)
chr8 (49-165)||(33952878-33952994)
chr8 (270-366)||(33953092-33953188)
chr8 (49-165)||(33960184-33960300)
chr8 (270-366)||(33975693-33975789)
chr8 (49-165)||(33992397-33992513)
chr8 (248-408)||(33992590-33992750)
chr8 (278-395)||(33942639-33942756)
chr8 (276-404)||(33913917-33914048)
[»] chr7 (2 HSPs)
chr7 (270-366)||(8277564-8277660)
chr7 (49-165)||(8277762-8277878)


Alignment Details
Target: scaffold0391 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 12403 - 12794
Alignment:
Q  17 atgaatgaaaacaaacatgaacggtgtttaggggagaagcatcaaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12403 atgaatgaaaacaaacatgaacggtgtttaggggagaagcatcaaagcctgatgacttgtatattgtcaaaacttctgacattgtgtgttaaacaaaatc 12502  T
Q  117 tgcaacagctcgctgcccgtatattgtcagtatcaactggttagtaatatttgtaccttcatcaaaattatattcaccaacataaaactagaaagtggta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12503 tgcaacagctcgctgcccgtatattgtcagtatcaactggttagtaatatttgtaccttcatcaaaattatattcactaacataaaactagaaagtggta 12602  T
Q  217 ttaaaaacatgatgcaatcttcattccttatttttcaacaattgatcttgtatgtttcacgtttgcagatgaaacttgtgcgccagattggtcccaaatg 316  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12603 ttaaacacatgatgcaatcttcattccttatttttcaacaattgatcttgtatgtttcacgtttgcagatgaaacttgtgcgccagattggtcccaaatg 12702  T
Q  317 caaccagctcaggccgaggttttaattttaaatcttcataccaagcagtatatacttcccaagttgatggagaaaatgagtaaactaaaagt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12703 caaccagctcaggccgaggttttaattttaaatcttcataccaagcagtatatgcttcccaagttgatggagaaaatgagtaaactaaaagt 12794  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 33975484 - 33975600
Alignment:
Q  49 ggagaagcatcaaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagta 148  Q
    ||||||||| ||| || ||||||| |||||||| |||||  || ||| ||||||||||||||||||||  |||||||| ||||||||||||||||| |||    
T  33975484 ggagaagcagcaaggcttgatgacccgtatattttcaaagtttatgagattgtgtgttaaacaaaatcctcaacagcttgctgcccgtatattgtcggta 33975583  T
Q  149 tcaactggttagtaata 165  Q
    |||||||||||||||||    
T  33975584 tcaactggttagtaata 33975600  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 271 - 366
Target Start/End: Original strand, 33960399 - 33960494
Alignment:
Q  271 tttcacgtttgcagatgaaacttgtgcgccagattggtcccaaatgcaaccagctcaggccgaggttttaattttaaatcttcataccaagcagta 366  Q
    |||||| |||||||||||||| ||||||   |||||||| ||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||    
T  33960399 tttcacatttgcagatgaaacatgtgcgttcgattggtctcaaatgcaaccagctcaggtcgaggttctgattttaaatattcataccaagcagta 33960494  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 33952878 - 33952994
Alignment:
Q  49 ggagaagcatcaaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagta 148  Q
    ||||||||| ||| || |||||||  |||||||||||||  || ||| ||||||||||||||  ||||  ||||||||| |||||||||||||||| |||    
T  33952878 ggagaagcagcaaggcttgatgacctgtatattgtcaaagtttatgagattgtgtgttaaacggaatcctcaacagctcactgcccgtatattgtcggta 33952977  T
Q  149 tcaactggttagtaata 165  Q
    ||| |||||||||||||    
T  33952978 tcagctggttagtaata 33952994  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 33953092 - 33953188
Alignment:
Q  270 gtttcacgtttgcagatgaaacttgtgcgccagattggtcccaaatgcaaccagctcaggccgaggttttaattttaaatcttcataccaagcagta 366  Q
    ||||||| |||||||||||||| ||||||   |||||||| |||||| ||||||||||||  |||||| | ||||||||||||||||||||||||||    
T  33953092 gtttcacatttgcagatgaaacatgtgcgttcgattggtctcaaatggaaccagctcaggttgaggttctgattttaaatcttcataccaagcagta 33953188  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 33960184 - 33960300
Alignment:
Q  49 ggagaagcatcaaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagta 148  Q
    ||||||||| ||| || |||||||  |||||||||||||  || ||| ||||||||||||||  ||||  ||||||||| |||||||||||||||| |||    
T  33960184 ggagaagcagcaaggcttgatgacctgtatattgtcaaagtttatgagattgtgtgttaaacggaatcctcaacagctcactgcccgtatattgtcggta 33960283  T
Q  149 tcaactggttagtaata 165  Q
    ||| |||||||||||||    
T  33960284 tcagctggttagtaata 33960300  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 33975693 - 33975789
Alignment:
Q  270 gtttcacgtttgcagatgaaacttgtgcgccagattggtcccaaatgcaaccagctcaggccgaggttttaattttaaatcttcataccaagcagta 366  Q
    ||||||| |||||||||||||| ||||||   |||||||| || |||||||||||||||| ||||||| | ||||||||| ||||||||||||||||    
T  33975693 gtttcacatttgcagatgaaacatgtgcgttggattggtctcatatgcaaccagctcaggtcgaggttctgattttaaatattcataccaagcagta 33975789  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 33992397 - 33992513
Alignment:
Q  49 ggagaagcatcaaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagta 148  Q
    ||||||||| |||||| || |||| ||||||||||||||| |  ||| ||||||| ||||||||||||  |||||||| ||||| |  |||||||| |||    
T  33992397 ggagaagcagcaaagcttgttgacccgtatattgtcaaaagtaatgagattgtgtattaaacaaaatccccaacagcttgctgctcacatattgtcggta 33992496  T
Q  149 tcaactggttagtaata 165  Q
    |||||||||||||||||    
T  33992497 tcaactggttagtaata 33992513  T

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Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 248 - 408
Target Start/End: Original strand, 33992590 - 33992750
Alignment:
Q  248 ttttcaacaattgatcttgtatgtttcacgtttgcagatgaaacttgtgcgccagattggtcccaaatgcaaccagctcaggccgaggttttaattttaa 347  Q
    ||||| |||||||||  |||  ||||||  |||||||||||| | |||||| |||||||||| |||||||||||| |||||| ||||||||| |||||||    
T  33992590 ttttccacaattgattgtgttagtttcaaatttgcagatgaagcatgtgcgtcagattggtctcaaatgcaaccaactcaggtcgaggttttgattttaa 33992689  T
Q  348 atcttcataccaagcagtatatacttcccaagttgatggagaaaatgagtaaactaaaagt 408  Q
    || | ||||||||||| ||   | ||||  ||| |||  | ||||||||||||||||||||    
T  33992690 atttgcataccaagcaatactcatttcctgagtcgatcaaaaaaatgagtaaactaaaagt 33992750  T

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Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 395
Target Start/End: Original strand, 33942639 - 33942756
Alignment:
Q  278 tttgcagatgaaacttgtgcgccagattggtcccaaatgcaaccagctcaggccgaggttttaattttaaatcttcataccaagcagtatatacttccca 377  Q
    ||||||||||||||||| ||  |||||||||||||| |||| |||||||  || |||||| | |||||||||||||| ||||| ||||| | | ||||      
T  33942639 tttgcagatgaaacttgcgcttcagattggtcccaagtgcagccagctcttgctgaggttctgattttaaatcttcaaaccaaacagtacacatttccag 33942738  T
Q  378 agttgatggagaaaatga 395  Q
    | ||||||||||||||||    
T  33942739 aattgatggagaaaatga 33942756  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 404
Target Start/End: Original strand, 33913917 - 33914048
Alignment:
Q  276 cgtttgcagatgaaacttgtgcgcc---agattggtcccaaatgcaaccagctcaggccgaggttttaattttaaatcttcataccaagcagtatatact 372  Q
    ||||| ||||||||||||||||  |   ||||||||||||| |||| |||||||| |  |||||| | ||||||| |||||| ||| | ||||| | |||    
T  33913917 cgttttcagatgaaacttgtgcttcttcagattggtcccaagtgcagccagctcatgttgaggttctgattttaattcttcaaaccgaacagtacacact 33914016  T
Q  373 tcccaagttgatggagaaaatgagtaaactaa 404  Q
    |||  | |||| |||||||||||| |||||||    
T  33914017 tccagaattgaaggagaaaatgagcaaactaa 33914048  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 8277660 - 8277564
Alignment:
Q  270 gtttcacgtttgcagatgaaacttgtgcgccagattggtcccaaatgcaaccagctcaggccgaggttttaattttaaatcttcataccaagcagta 366  Q
    ||||||| |||||||||||||| | ||||   |||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  8277660 gtttcacatttgcagatgaaacatatgcgttggattggtctcaaatacaaacagctcaggccgaggttctaattttaaatcttcataccaagcagta 8277564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 8277878 - 8277762
Alignment:
Q  49 ggagaagcatcaaagcctgatgactcgtatattgtcaaaacttctgacattgtgtgttaaacaaaatctgcaacagctcgctgcccgtatattgtcagta 148  Q
    ||||||||| ||| |  ||||||| ||||||||||||||  || ||| ||| ||||||||||||||||  |||||  ||||||||||||||||||| |||    
T  8277878 ggagaagcagcaaggtttgatgacccgtatattgtcaaagtttatgagattttgtgttaaacaaaatcctcaacatttcgctgcccgtatattgtcggta 8277779  T
Q  149 tcaactggttagtaata 165  Q
    |||||||||||||||||    
T  8277778 tcaactggttagtaata 8277762  T

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