View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1569_low_6 (Length: 411)

Name: NF1569_low_6
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1569_low_6
NF1569_low_6
[»] chr7 (2 HSPs)
chr7 (9-393)||(38176814-38177198)
chr7 (18-208)||(42414430-42414620)
[»] chr2 (4 HSPs)
chr2 (82-390)||(28626934-28627242)
chr2 (41-199)||(34211959-34212117)
chr2 (84-199)||(18977953-18978068)
chr2 (159-250)||(35582057-35582148)
[»] chr3 (3 HSPs)
chr3 (269-393)||(1526683-1526807)
chr3 (94-200)||(8689686-8689792)
chr3 (94-200)||(9041555-9041661)
[»] chr8 (1 HSPs)
chr8 (41-199)||(8619084-8619242)
[»] chr5 (2 HSPs)
chr5 (84-199)||(22498411-22498526)
chr5 (93-200)||(12169085-12169192)
[»] scaffold0094 (1 HSPs)
scaffold0094 (15-199)||(14394-14578)
[»] chr1 (1 HSPs)
chr1 (52-145)||(19024112-19024205)
[»] chr6 (1 HSPs)
chr6 (96-222)||(31973257-31973385)
[»] chr4 (1 HSPs)
chr4 (159-240)||(49110185-49110266)


Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 9 - 393
Target Start/End: Complemental strand, 38177198 - 38176814
Alignment:
Q  9 gaagaatatcgagtaccgggagaatggactcgaatgtggagtttgaagataccacaaagagtaaaagtctttgtctggagagcattgagaggtgttcttc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  38177198 gaagaatatcgagtaccgggagaatggactcgaatgtggagtttgaagataccacaaagagtaaaagtctttctctggagagcgttgagaggtgttcttc 38177099  T
Q  109 ctacgcgtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggcatgtttttcttggatg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38177098 ctacgcgtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggcatgtttttcttggatg 38176999  T
Q  209 cgatgaggcgaagacagtttggcgaacagctggcttatgggacgtcatttctgcaactgttgctgttgccgagagctttgcagcttgtattttctcttta 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38176998 cgatgaggcgaagacagtttggcgaacagctggcttatgggacgtcatttctgcaactgttgctgttgccgagagctttgcagcttgtattttctcttta 38176899  T
Q  309 ctgtgcaggctgacagttgaagaatgcaaggacttggcgatgatgttatggtgtatttggagacgtcgtaatgacaaggtatggg 393  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38176898 ctgtgcaggctgatagttgaagaatgcaaggacttggcgatgatgttatggtgtatttggagacgtcgtaatgacaaggtatggg 38176814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 42414430 - 42414620
Alignment:
Q  18 cgagtaccgggagaatggactcgaatgtggagtttgaagataccacaaagagtaaaagtctttgtctggagagcattgagaggtgttcttcctacgcgta 117  Q
    ||||||||||| || |||||  |||||||||   ||||||| ||  ||||| | ||||| ||| | ||||| ||| ||||||| || || || |||||||    
T  42414430 cgagtaccgggggactggacaagaatgtggaaaatgaagattccggaaagaattaaagtatttttatggagggcactgagaggagtactccccacgcgta 42414529  T
Q  118 tgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggcatgtttttcttggatg 208  Q
    ||||||| ||||| |||||||| || || || ||| | || |||||||| |||||||||||||| ||||| ||| || ||||  |||||||    
T  42414530 tgcgacttcaagataaaggtgttccgtgcacggatagctgccctttttgcgaaacaaattatgaaaatgattggtatattttcattggatg 42414620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 82 - 390
Target Start/End: Complemental strand, 28627242 - 28626934
Alignment:
Q  82 tctggagagcattgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatga 181  Q
    |||||||||  ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||| | ||||||||||||||||||||||||    
T  28627242 tctggagagtgttgagaggtgttcttcctacgcgtatgcgactgccggacaaaggtgtgccatgtacatattgctctcctttttgtgaaacaaattatga 28627143  T
Q  182 gaatgactggcatgtttttcttggatgcgatgaggcgaagacagtttggcgaacagctggcttatgggacgtcatttctgcaactgttgctgttgccgag 281  Q
    ||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| ||  |||||||||||| |||||| | ||||||| |||||| |||    
T  28627142 gaacgactggcatgtttttattggatgcgacgaggcgaagacagtttggcgaacaactaccttatgggacgtgatttctactactgttgatgttgctgag 28627043  T
Q  282 agctttgcagcttgtattttctctttactgtgcaggctgacagttgaagaatgcaaggacttggcgatgatgttatggtgtatttggagacgtcgtaatg 381  Q
    ||||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||| ||||||  ||||||||||||||||||||||||| ||||||||    
T  28627042 agctttgcaacttgtattttctctttactgtgcaggttgatagttgaagagtgcaagcacttggtaatgatgttatggtgtatttggagacatcgtaatg 28626943  T
Q  382 acaaggtat 390  Q
    | |||||||    
T  28626942 ataaggtat 28626934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 41 - 199
Target Start/End: Original strand, 34211959 - 34212117
Alignment:
Q  41 aatgtggagtttgaagataccacaaagagtaaaagtctttgtctggagagcattgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtg 140  Q
    |||||||||||| ||||| || |||||  ||||||| ||  | ||||||||  |||| |||| | | ||||||||||||||  ||||||| |||| |||     
T  34211959 aatgtggagtttaaagattcctcaaaggataaaagttttcctttggagagctgtgaggggtgctttgcctacgcgtatgcggttgcaagataaagttgtt 34212058  T
Q  141 ccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggcatgtttt 199  Q
    || ||||| ||||| ||||||||||||||||||||||| |||||  | |||||||||||    
T  34212059 ccgtgtacggattgctgtcctttttgtgaaacaaattacgagaacaattggcatgtttt 34212117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 18978068 - 18977953
Alignment:
Q  84 tggagagcattgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgaga 183  Q
    ||||||||  |||| |||||| ||| || |||||||||  ||| ||| |||||||| |||||||| ||||| ||||||||||||||||||||||| || |    
T  18978068 tggagagctgtgaggggtgtttttcttatgcgtatgcggttgccagataaaggtgttccatgtacggattgctgtcctttttgtgaaacaaattacgaaa 18977969  T
Q  184 atgactggcatgtttt 199  Q
    | || |||||||||||    
T  18977968 acgattggcatgtttt 18977953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 35582148 - 35582057
Alignment:
Q  159 cctttttgtgaaacaaattatgagaatgactggcatgtttttcttggatgcgatgaggcgaagacagtttggcgaacagctggcttatggga 250  Q
    |||||||| ||||||||||||||||||||||  ||| ||||  |||| ||||| |||||||| |  ||||||| |||| |||| || |||||    
T  35582148 cctttttgcgaaacaaattatgagaatgactaacatattttcattgggtgcgaagaggcgaaaaatgtttggctaacaactggattgtggga 35582057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 269 - 393
Target Start/End: Original strand, 1526683 - 1526807
Alignment:
Q  269 tgctgttgccgagagctttgcagcttgtattttctctttactgtgcaggctgacagttgaagaatgcaaggacttggcgatgatgttatggtgtatttgg 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1526683 tgctgttgccgagagctttgcagcttgtattttctctttactgtgcaggctgacagttgaagaatgcaaggacttggcgatgatgttatggtgtatttgg 1526782  T
Q  369 agacgtcgtaatgacaaggtatggg 393  Q
    |||||||||||||||||||||||||    
T  1526783 agacgtcgtaatgacaaggtatggg 1526807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 8689686 - 8689792
Alignment:
Q  94 tgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggca 193  Q
    ||||||||||||| |  || |||||| |||| ||||| ||||||||||  ||| |  || |||| || ||||||| |||||||||||||||||| | |||    
T  8689686 tgagaggtgttctccaaactcgtatgagactacaagataaaggtgtgcagtgttcgaatagttggccattttgtgcaacaaattatgagaatgattagca 8689785  T
Q  194 tgttttt 200  Q
    |||||||    
T  8689786 tgttttt 8689792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 9041555 - 9041661
Alignment:
Q  94 tgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggca 193  Q
    ||||||||||||| |  || |||||| |||| ||||| ||||||||||  ||| |  || |||| || ||||||| |||||||||||||||||| | |||    
T  9041555 tgagaggtgttctccaaactcgtatgagactacaagataaaggtgtgcagtgttcgaatagttggccattttgtgcaacaaattatgagaatgattagca 9041654  T
Q  194 tgttttt 200  Q
    |||||||    
T  9041655 tgttttt 9041661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 8619242 - 8619084
Alignment:
Q  41 aatgtggagtttgaagataccacaaagagtaaaagtctttgtctggagagcattgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtg 140  Q
    |||||||||||||||||| || ||||| |||||||| ||  | ||||||||  | || |||||| ||||||||||||||||  ||||||| ||||||||     
T  8619242 aatgtggagtttgaagattccgcaaagggtaaaagttttcctttggagagctgtaaggggtgtttttcctacgcgtatgcggatgcaagataaaggtgtt 8619143  T
Q  141 ccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggcatgtttt 199  Q
    |||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||    
T  8619142 ccatgtacggattgttgtcctttttgtgaaacaaattacgagaacgattggcatgtttt 8619084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 22498526 - 22498411
Alignment:
Q  84 tggagagcattgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgaga 183  Q
    ||||||||  |||| |||||| | ||||||||||||||  ||||||| |||||||| || ||||| ||||| ||||||||||||||||||||||| ||||    
T  22498526 tggagagctgtgaggggtgttttgcctacgcgtatgcggttgcaagataaaggtgttccgtgtacggattgctgtcctttttgtgaaacaaattacgaga 22498427  T
Q  184 atgactggcatgtttt 199  Q
    | || |||||||||||    
T  22498426 acgattggcatgtttt 22498411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 12169085 - 12169192
Alignment:
Q  93 ttgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggc 192  Q
    |||||||||||||| || || |||||| |||| ||||||||||| |||| |||||| ||| | ||||| ||||||||||| |||||||||||||| || |    
T  12169085 ttgagaggtgttctcccaactcgtatgagactacaagacaaaggcgtgcaatgtacggatagctgtccattttgtgaaactaattatgagaatgattgac 12169184  T
Q  193 atgttttt 200  Q
    | ||||||    
T  12169185 acgttttt 12169192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 14394 - 14578
Alignment:
Q  15 tatcgagtaccgggagaatggactcgaatgtggagtttgaagataccacaaagagtaaaagtctttgtctggagagcattgagaggtgttcttcctacgc 114  Q
    |||||||||||||| || || ||  |||||||||   ||||||| || |||||| | ||||| ||| | ||||| ||| ||||||| || || || ||||    
T  14394 tatcgagtaccgggggactgtacaagaatgtggaaaatgaagattccgcaaagaattaaagtatttttatggagggcactgagaggagtactccccacgc 14493  T
Q  115 gtatgcgactgcaagacaaaggtgtgccatgtacagattgttgtcctttttgtgaaacaaattatgagaatgactggcatgtttt 199  Q
    |||||||||| ||||| |||||||| || || || ||| | |  |||||||| |||||||||||||| ||||| |||||| ||||    
T  14494 gtatgcgacttcaagataaaggtgttccgtgcacggatagctaccctttttgcgaaacaaattatgaaaatgattggcatatttt 14578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 19024205 - 19024112
Alignment:
Q  52 tgaagataccacaaagagtaaaagtctttgtctggagagcattgagaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatg 145  Q
    ||||| |||| ||||| |||||||  ||| | ||||| ||||| ||||||||||||||||| || ||| |||| |||||||||||||| |||||    
T  19024205 tgaagttaccgcaaagggtaaaagcgtttttatggagggcattaagaggtgttcttcctacccggatgagacttcaagacaaaggtgttccatg 19024112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 31973385 - 31973257
Alignment:
Q  96 agaggtgttcttcctacgcgtatgcgactgcaagacaaaggtgtgccatgtaca--gattgttgtcctttttgtgaaacaaattatgagaatgactggca 193  Q
    ||||||||||||||||| || ||   ||| ||||| ||| |||||||||||||   ||| ||||||||  |||||| ||||||||||| ||||| |||||    
T  31973385 agaggtgttcttcctacacgaataaaactacaagaaaaatgtgtgccatgtacgaggatagttgtcctcattgtgagacaaattatgaaaatgattggca 31973286  T
Q  194 tgtttttcttggatgcgatgaggcgaaga 222  Q
    |||  || | |||||| | ||||||||||    
T  31973285 tgtcgttataggatgcaaggaggcgaaga 31973257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 49110185 - 49110266
Alignment:
Q  159 cctttttgtgaaacaaattatgagaatgactggcatgtttttcttggatgcgatgaggcgaagacagtttggcgaacagctg 240  Q
    ||||||||| ||||||| ||||||||||| || ||||| ||  |||| ||||| |||||||| |  ||||||||||| ||||    
T  49110185 cctttttgtcaaacaaactatgagaatgattgacatgtgttcattggctgcgaagaggcgaaaaatgtttggcgaacggctg 49110266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University