View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1569_low_8 (Length: 389)
Name: NF1569_low_8
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1569_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 971565 - 971935
Alignment:
| Q |
1 |
tttttgattctatttgtaattggctttgtaatgattttaagaattacattacaaagggcaagtggtctgaagtcagaaggtaaagtaggttttttaacct |
100 |
Q |
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| T |
971565 |
tttttgattctatttgcaattgtctttataatgattataagaattacattacaaagggcaattggtctgaagtcagaaggtaaagtagattttttaacct |
971664 |
T |
|
| Q |
101 |
taggaataagacaaagaaaagtgtgattgatattgccaggatctccattgttattaagaatattaagggcatactcaataatctcagtaccaatttctgc |
200 |
Q |
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| T |
971665 |
taggaataagacaaagaaaagtgtgattgatattaccaggatctccattgttattaagaacattaagggcatactcaataatctcagtaccaatttctgc |
971764 |
T |
|
| Q |
201 |
ccaataggattgatagaacagggcaggtaaaccatctggtccaggggcagctgaacttttcatctgtctaatagcctcaaaaacctcggtagcagtgaaa |
300 |
Q |
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| T |
971765 |
ccaataggattgatagaacagggcaggtaaaccatctggtccaggggcagctgaacttttcatctgtctaatagcctcaaaaacctcagtagcagtgaaa |
971864 |
T |
|
| Q |
301 |
tcttgctagaggtactcatgcatatcaggcttgattatatttttaacaacttcaatagtatcctgcatgtt |
371 |
Q |
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| T |
971865 |
tcttgctagaggtactcatgcatatcaggcttgattatatttttaacaacttcaatagtatcctgcatgtt |
971935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 287
Target Start/End: Original strand, 43136655 - 43136869
Alignment:
| Q |
73 |
tcagaaggtaaagtaggttttttaaccttaggaataagacaaagaaaagtgtgattgatattgccaggatctccattgttattaagaatattaagggcat |
172 |
Q |
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| T |
43136655 |
tcagaaggtaaagtagggtttttgattttaggtataagacagagaagagtgtggttgatattaccaatatcacaattgtgatttagaatattaagaacaa |
43136754 |
T |
|
| Q |
173 |
actcaataatctcagtaccaatttctgcccaataggattgatagaacagggcaggtaaaccatctggtccaggggcagctgaacttttcatctgtctaat |
272 |
Q |
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| | | | || |||| |||||| || |||| || ||||||||||| ||||| || | ||||| || || || ||||| | |||||||| ||| |||| |
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| T |
43136755 |
aattagtgatatcagaaccaatatcctcccagtaagattgatagaaaagggctggaagcccatcagggcctggagcagcaaagcttttcatttgtttaat |
43136854 |
T |
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| Q |
273 |
agcctcaaaaacctc |
287 |
Q |
| |
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||| ||||||||||| |
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| T |
43136855 |
agcatcaaaaacctc |
43136869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 227
Target Start/End: Complemental strand, 6523179 - 6523052
Alignment:
| Q |
100 |
ttaggaataagacaaagaaaagtgtgattgatattgccaggatctccattgttattaagaatattaagggcatactcaataatctcagtaccaatttctg |
199 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||| ||||| | ||||| || |||||| |||| ||| | || ||| ||||||| | |
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| T |
6523179 |
ttaggaataagacaaaggtgagtgtgattgatattaccaggatccccattatggttaaggattttaaggacataatcagtgatatcattaccaatgacct |
6523080 |
T |
|
| Q |
200 |
cccaataggattgatagaacagggcagg |
227 |
Q |
| |
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||||||| ||||||||||| || ||||| |
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| T |
6523079 |
cccaataagattgatagaatagagcagg |
6523052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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