View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1569_low_9 (Length: 388)
Name: NF1569_low_9
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1569_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 5 - 373
Target Start/End: Original strand, 42684083 - 42684449
Alignment:
| Q |
5 |
tgtctccctatcctgatcccatcaaacggactataaaagtggggtttgacatggtataacactcttcaccattaatttgagtaataaaactctatccacc |
104 |
Q |
| |
|
|||||||||||||| | |||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42684083 |
tgtctccctatcctaa--ccatcaaacgaaccctaaaagtggggtttgacacggtataacactcttcaccattaatttgagtaataaaacactatccacc |
42684180 |
T |
|
| Q |
105 |
actaatttattatcaactcaaaagtaacaatgtaaaaatggttagattttataagaaaagttgaacaaataacaataatgacaaccaaactataaatgat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42684181 |
actaatttattatcaactcaaaagtaacaatgtaaaaatagttagattttataagaaaagttgaacaaataacaataatgacaaccaaactataaatgat |
42684280 |
T |
|
| Q |
205 |
ccagaatataatgattcaaccaaagataaattcagaatctatatgcataagaaatttcaaacaatcaaactaaaaacaaaaataaatagattatgggaat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42684281 |
ccagaatataatgattcaaccaaagataaattcagaatctatatgcataagaaatttcaaacaatcaaactaaaaacaaaaataaatagattatgggaat |
42684380 |
T |
|
| Q |
305 |
aacaccgtgttttgttcacaaagttcgccctaagaaaatgccgacgttgcaggagaaaacacatctctg |
373 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
42684381 |
aacaccgttttttgttcacagagtttgccctaagaaaatgccgatgttgcaggagaaaacacctctctg |
42684449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University