View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15700_high_3 (Length: 305)
Name: NF15700_high_3
Description: NF15700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15700_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 14538546 - 14538259
Alignment:
| Q |
1 |
tgttcacgcttaaggaagactaaaatagttgggatcattacattaaattaagagcatccacacaaatgagttgacaat--------------------ag |
80 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| || |
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| T |
14538546 |
tgttcatgcttaaggaagactaaaatagttgggatcattatattaaattaagagcatccacacaaacgagttgacaaccactaaaattttaagtcaagag |
14538447 |
T |
|
| Q |
81 |
gaatatctaaatctaaaattttaaggcaatagagatatgataaattccttaatgtcttaatcaatgtatatattccttaatctaatttgaaacttcccac |
180 |
Q |
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| T |
14538446 |
ggatttctaaatctaaaattttaaggcaatagagatatgataaattccttaatgtcttaatcaatgtatatattccttaatctaatttgaaacttcccac |
14538347 |
T |
|
| Q |
181 |
tcacacatgattaactacaccaacttagatactattggttttaatttagagaataatttagtagttgagtttgagttagatttctagc |
268 |
Q |
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||||||||||||||||||| |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14538346 |
tcacacatgattaactacatcaacttagattctcttggttttaatttagagattaatttagtagttgagtttgagttagatttctagc |
14538259 |
T |
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