View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15700_high_5 (Length: 248)
Name: NF15700_high_5
Description: NF15700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15700_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 3263978 - 3264042
Alignment:
| Q |
17 |
aatatcgataaaacaagccaaattagtttgaaaaataggactaccttacacatgagctaaactat |
81 |
Q |
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| T |
3263978 |
aatatcgataaaacaagccaaattagtttgaaaaataggactaccttacacatgagctaaactat |
3264042 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 27736348 - 27736249
Alignment:
| Q |
38 |
attagtttgaaaaataggactaccttacacatgagctaaactattgcaaatatcactaaaacattgcaaatgaattaattcatcgaataagtaattgtat |
137 |
Q |
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| T |
27736348 |
attagttcgaaatatagggctatctttcacacgtgccaaactattgcaaagatcactaaaa-aatgcaaattaattaattaatcaaacaagtgattatat |
27736250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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