View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15700_low_2 (Length: 675)

Name: NF15700_low_2
Description: NF15700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15700_low_2
NF15700_low_2
[»] scaffold0781 (4 HSPs)
scaffold0781 (1-409)||(4909-5318)
scaffold0781 (451-534)||(4784-4867)
scaffold0781 (597-675)||(4646-4725)
scaffold0781 (642-675)||(6235-6268)
[»] chr6 (9 HSPs)
chr6 (1-409)||(2216452-2216861)
chr6 (451-534)||(2216327-2216410)
chr6 (597-675)||(2216189-2216268)
chr6 (597-675)||(2217778-2217854)
chr6 (1-63)||(11643813-11643875)
chr6 (1-63)||(18494797-18494858)
chr6 (1-63)||(24798689-24798751)
chr6 (1-51)||(24798855-24798905)
chr6 (3-49)||(11643898-11643944)
[»] chr8 (8 HSPs)
chr8 (1-63)||(14996680-14996743)
chr8 (1-63)||(11867903-11867965)
chr8 (1-63)||(13884709-13884771)
chr8 (1-49)||(13884553-13884601)
chr8 (1-63)||(2554071-2554133)
chr8 (3-49)||(14996608-14996654)
chr8 (1-63)||(29714606-29714668)
chr8 (6-51)||(2554002-2554047)
[»] chr2 (6 HSPs)
chr2 (1-63)||(2916442-2916504)
chr2 (1-63)||(40987721-40987783)
chr2 (1-63)||(16973128-16973190)
chr2 (3-51)||(16973213-16973261)
chr2 (1-63)||(2916598-2916660)
chr2 (1-49)||(11533679-11533728)
[»] chr1 (12 HSPs)
chr1 (1-63)||(22683205-22683267)
chr1 (1-51)||(15825754-15825804)
chr1 (1-49)||(37189583-37189631)
chr1 (1-51)||(10824602-10824652)
chr1 (1-63)||(19056214-19056276)
chr1 (1-62)||(37189431-37189492)
chr1 (3-51)||(10824519-10824567)
chr1 (1-49)||(18844523-18844571)
chr1 (3-51)||(22683290-22683338)
chr1 (1-63)||(10824432-10824494)
chr1 (3-49)||(19056386-19056432)
chr1 (1-51)||(22683374-22683424)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-63)||(22926-22988)
[»] chr7 (6 HSPs)
chr7 (1-63)||(47373528-47373590)
chr7 (1-49)||(30862282-30862330)
chr7 (1-51)||(28715706-28715756)
chr7 (1-63)||(47373683-47373745)
chr7 (2-63)||(6474502-6474563)
chr7 (8-63)||(6474351-6474407)
[»] chr4 (6 HSPs)
chr4 (1-51)||(39161352-39161402)
chr4 (1-49)||(50509363-50509411)
chr4 (1-49)||(37996129-37996177)
chr4 (1-49)||(55173488-55173536)
chr4 (1-63)||(47096863-47096924)
chr4 (3-51)||(39161436-39161484)
[»] chr3 (7 HSPs)
chr3 (1-63)||(40244689-40244752)
chr3 (3-49)||(20538076-20538122)
chr3 (1-51)||(46003481-46003531)
chr3 (3-51)||(46003398-46003446)
chr3 (1-51)||(20537990-20538040)
chr3 (1-63)||(51663471-51663533)
chr3 (1-49)||(51663314-51663362)
[»] chr5 (2 HSPs)
chr5 (2-63)||(21249427-21249488)
chr5 (3-51)||(21249511-21249559)


Alignment Details
Target: scaffold0781 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 5318 - 4909
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagtttatttgtagtaattttcagttcatcataaagcttggaa 100  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5318 tttgtaccaatttggtcccctatgttttgctttgttattagttttagtcatttatgttagtttatttgtagtaattttcagttcatcataaagcttggaa 5219  T
Q  101 taatgnnnnnnncaataggcttggaatggtgtatgattttataatacttgaaaacgattaaagtatttttaatatagtaaaatgggagatataattaaaa 200  Q
    |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5218 taatgcttttttcaataggcttggaatggtgtatgattttataatacttgaaaacgattaaagtatttttaatatagtaaaatgggagatctaattaaaa 5119  T
Q  201 atttaaatgtgattttttggttctcgcattagctaaaatgggacaaagtatgaaatattagagaaatgtcttataaacatgttttcataatgttcggatg 300  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  5118 atttaaatgtgattttttggttctcgcattagctaaaa-gggacaaagtatgaaatattagagaaacgacttataaacatgttttcataatgttcggatg 5020  T
Q  301 cacaatttgttaatgctaatacataatttcttcacttcataatatggtagtagatcctcctt--nnnnnnnntatggtagtagattttccctcgtgggaa 398  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||    
T  5019 cacaatttgttaatgctaatgcataatttcttcacttcataatatggtagtagatcctccttaaaaaaaaaatatggtagtagattttccctcgtgggaa 4920  T
Q  399 agtttgttacg 409  Q
    |||||||||||    
T  4919 agtttgttacg 4909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 451 - 534
Target Start/End: Complemental strand, 4867 - 4784
Alignment:
Q  451 gatgaagtttctgcgtagttcttcatcttatttgttcgatcttcattctctattcgcaatcatccattgattttgcgattcatc 534  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4867 gatgaagtttctacgtagttcttcatcttatttgttcgatcttcattctctattcgcaatcatccattgattttgtgattcatc 4784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 597 - 675
Target Start/End: Complemental strand, 4725 - 4646
Alignment:
Q  597 actactacttctttgatttattcatcaa-taattcgtccgtttcatcatgtcttttgtgcttcctgtttcttaattcttc 675  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4725 actactacttctttgatttattcatcaaataattcgtccttttcatcatgtcttttgtgcttcctgtttcttaattcttc 4646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 642 - 675
Target Start/End: Complemental strand, 6268 - 6235
Alignment:
Q  642 catgtcttttgtgcttcctgtttcttaattcttc 675  Q
    ||||||||||||||||| ||||||||||||||||    
T  6268 catgtcttttgtgcttcttgtttcttaattcttc 6235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 2216861 - 2216452
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagtttatttgtagtaattttcagttcatcataaagcttggaa 100  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2216861 tttgtaccaatttggtcccctatgttttgctttgttattagttttagtcatttatgttagtttatttgtagtaattttcagttcatcataaagcttggaa 2216762  T
Q  101 taatgnnnnnnncaataggcttggaatggtgtatgattttataatacttgaaaacgattaaagtatttttaatatagtaaaatgggagatataattaaaa 200  Q
    |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2216761 taatgcttttttcaataggcttggaatggtgtatgattttataatacttgaaaacgattaaagtatttttaatatagtaaaatgggagatctaattaaaa 2216662  T
Q  201 atttaaatgtgattttttggttctcgcattagctaaaatgggacaaagtatgaaatattagagaaatgtcttataaacatgttttcataatgttcggatg 300  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  2216661 atttaaatgtgattttttggttctcgcattagctaaaa-gggacaaagtatgaaatattagagaaacgacttataaacatgttttcataatgttcggatg 2216563  T
Q  301 cacaatttgttaatgctaatacataatttcttcacttcataatatggtagtagatcctcctt--nnnnnnnntatggtagtagattttccctcgtgggaa 398  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||    
T  2216562 cacaatttgttaatgctaatgcataatttcttcacttcataatatggtagtagatcctccttaaaaaaaaaatatggtagtagattttccctcgtgggaa 2216463  T
Q  399 agtttgttacg 409  Q
    |||||||||||    
T  2216462 agtttgttacg 2216452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 451 - 534
Target Start/End: Complemental strand, 2216410 - 2216327
Alignment:
Q  451 gatgaagtttctgcgtagttcttcatcttatttgttcgatcttcattctctattcgcaatcatccattgattttgcgattcatc 534  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2216410 gatgaagtttctacgtagttcttcatcttatttgttcgatcttcattctctattcgcaatcatccattgattttgtgattcatc 2216327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 597 - 675
Target Start/End: Complemental strand, 2216268 - 2216189
Alignment:
Q  597 actactacttctttgatttattcatcaa-taattcgtccgtttcatcatgtcttttgtgcttcctgtttcttaattcttc 675  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2216268 actactacttctttgatttattcatcaaataattcgtccttttcatcatgtcttttgtgcttcctgtttcttaattcttc 2216189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 597 - 675
Target Start/End: Complemental strand, 2217854 - 2217778
Alignment:
Q  597 actactacttctttgatttattcatcaataattcgtccgtttcatcatgtcttttgtgcttcctgtttcttaattcttc 675  Q
    ||||||| || ||||||| ||||||||||  ||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  2217854 actactatttttttgattgattcatcaat--ttcgtccatttcatcatgtcttttgtgcttcttgtttcttaattcttc 2217778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11643813 - 11643875
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||| ||||||| | |||||||||||| ||||||||||||||||||||| | |||||||||    
T  11643813 tttgtatcaatttggttccctatgttttgttttgttactagttttagtcctctctgttagttt 11643875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 18494797 - 18494858
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    ||||||||| |||| |||||||||||| | ||||||||||||||||||||| | |||||||||    
T  18494797 tttgtaccattttggtcccctatgttt-gctttgttactagttttagtcctttttgttagttt 18494858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 24798689 - 24798751
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||||||||||| ||| |||||||||| || |||||||||||||||| | | |||||||||    
T  24798689 tttgtaccaatttggtcctctatgttttgcttcgttactagttttagtcatttctgttagttt 24798751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24798905 - 24798855
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 51  Q
    |||||| ||||||| |||||||||||||| || ||||||||||||||||||    
T  24798905 tttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcct 24798855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 11643898 - 11643944
Alignment:
Q  3 tgtaccaatttgatcccctatgttttgatttgttactagttttagtc 49  Q
    |||||||||||| |||||||||||||| |  ||||||||||||||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagtc 11643944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 14996743 - 14996680
Alignment:
Q  1 tttgtaccaatttgatcccc-tatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||||    
T  14996743 tttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagttt 14996680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11867965 - 11867903
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||| ||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||    
T  11867965 tttgtatcaatttggtcctctatgttttgatttgtcactagttttagtcctttatgttagttt 11867903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13884771 - 13884709
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||||||||||| ||| |||||||||| || |||||| ||||||||||| | |||||||||    
T  13884771 tttgtaccaatttggtcctctatgttttgcttcgttactggttttagtcctttttgttagttt 13884709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13884553 - 13884601
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtc 49  Q
    ||||||||||||||  ||||||||||||| || ||||||||||||||||    
T  13884553 tttgtaccaatttggccccctatgttttgcttcgttactagttttagtc 13884601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2554133 - 2554071
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    ||||| |||||||| || ||||||||||| ||||||||| |||||||| || | |||||||||    
T  2554133 tttgttccaatttggtctcctatgttttgctttgttacttgttttagttctttctgttagttt 2554071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 14996608 - 14996654
Alignment:
Q  3 tgtaccaatttgatcccctatgttttgatttgttactagttttagtc 49  Q
    ||||| |||||| |||||||||||||| || ||||||||||||||||    
T  14996608 tgtactaatttggtcccctatgttttgcttcgttactagttttagtc 14996654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 29714606 - 29714668
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||||||||||| |||||||| ||||| ||||||||||| |||| || | | |||||||||    
T  29714606 tttgtaccaatttggtcccctatattttgctttgttactagctttaatcatttctgttagttt 29714668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 2554002 - 2554047
Alignment:
Q  6 accaatttgatcccctatgttttgatttgttactagttttagtcct 51  Q
    ||||||||| |||||||||||||  || ||||||||||||||||||    
T  2554002 accaatttggtcccctatgttttacttcgttactagttttagtcct 2554047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2916442 - 2916504
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||||||||||| |||||||||||||| |||||||||||||||| |||| | |||||||||    
T  2916442 tttgtaccaatttggtcccctatgttttgctttgttactagttttaatcctttctgttagttt 2916504  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 40987721 - 40987783
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||||||||||  || | ||||||||||||||||||||||||||||| | |||||||||||    
T  40987721 tttgtaccaatttagtctcatatgttttgatttgttactagttttagtcttttatgttagttt 40987783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 16973128 - 16973190
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||||||||||| |||||||||||||| || ||||||||||||| | || | |||||||||    
T  16973128 tttgtaccaatttggtcccctatgttttgcttcgttactagttttaattctttctgttagttt 16973190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 16973213 - 16973261
Alignment:
Q  3 tgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 51  Q
    |||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcct 16973261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2916660 - 2916598
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||||||| ||||||| |||| ||||| | ||||||||||||| ||||| | |||||||||    
T  2916660 tttgtaccaacttgatcctctatattttgctctgttactagttttggtcctttctgttagttt 2916598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11533728 - 11533679
Alignment:
Q  1 tttgtaccaatttgatcccc-tatgttttgatttgttactagttttagtc 49  Q
    |||||||||||||| ||||| ||||||||| ||| |||||||||||||||    
T  11533728 tttgtaccaatttggtccccctatgttttgctttattactagttttagtc 11533679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22683205 - 22683267
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||| ||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||    
T  22683205 tttgtatcaatttggtcccctatgttttgctttgttactagttttagtcctttctgttagttt 22683267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15825804 - 15825754
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 51  Q
    |||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  15825804 tttgtaccaatttggtcccctatgttttgctttgttattagttttagtcct 15825754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37189631 - 37189583
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtc 49  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||    
T  37189631 tttgtaccaatttggtcccctatgttttgcttcgttactagttttagtc 37189583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10824652 - 10824602
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 51  Q
    |||||| ||||||| |||||||||||||| || ||||||||||||||||||    
T  10824652 tttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcct 10824602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 19056214 - 19056276
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||| ||||||| |||||||| ||||| ||||||||||||||||||| | | |||||||||    
T  19056214 tttgtatcaatttggtcccctatattttgctttgttactagttttagtcttttctgttagttt 19056276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 37189431 - 37189492
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagtt 62  Q
    |||||||||||||| ||| |||||||||| |  |||||||||||||||||| | ||||||||    
T  37189431 tttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctgttagtt 37189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 10824567 - 10824519
Alignment:
Q  3 tgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 51  Q
    ||||||||||||||||||||||||||| |  ||| ||||||||||||||    
T  10824567 tgtaccaatttgatcccctatgttttgctccgttcctagttttagtcct 10824519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18844523 - 18844571
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtc 49  Q
    |||||| ||||||| |||||||||||||| || ||||||||||||||||    
T  18844523 tttgtatcaatttggtcccctatgttttgcttcgttactagttttagtc 18844571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 22683290 - 22683338
Alignment:
Q  3 tgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 51  Q
    |||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcct 22683338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10824432 - 10824494
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||| ||||||| ||| |||||||||| |  |||||||||||||||||| | |||||||||    
T  10824432 tttgtatcaatttggtcctctatgttttgctccgttactagttttagtcctttctgttagttt 10824494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 19056432 - 19056386
Alignment:
Q  3 tgtaccaatttgatcccctatgttttgatttgttactagttttagtc 49  Q
    |||||||||||| |  ||||||||||| |||||||||||||||||||    
T  19056432 tgtaccaatttggtatcctatgttttgctttgttactagttttagtc 19056386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 22683424 - 22683374
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 51  Q
    |||||||||||||| ||| |||||||||| |  ||||||||||||||||||    
T  22683424 tttgtaccaatttggtcctctatgttttgctccgttactagttttagtcct 22683374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 22988 - 22926
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||||||||||||||| |||||||||| |  |||||||||||||||||| | |||||||||    
T  22988 tttgtaccaatttgatcctctatgttttgctccgttactagttttagtcctttctgttagttt 22926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 47373528 - 47373590
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||||||||||| |||||||||||||| | |||| |||||||||||| | |||||||||||    
T  47373528 tttgtaccaatttggtcccctatgttttgctctgttgctagttttagtcatttatgttagttt 47373590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30862282 - 30862330
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtc 49  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  30862282 tttgtaccaatttggtcccctatattttgctttgttactagttttagtc 30862330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28715706 - 28715756
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 51  Q
    |||||| ||||||| |||||||||||||| || ||||||||||||||||||    
T  28715706 tttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcct 28715756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 47373745 - 47373683
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||||||||||  || | ||||||||||| |||||||||||||| |||| |||||||||||    
T  47373745 tttgtaccaatttagtctcatatgttttgatgtgttactagttttaatcctttatgttagttt 47373683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 6474563 - 6474502
Alignment:
Q  2 ttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    ||||||| ||||| |||| |||| |||| | ||||||||||||||||||| |||||||||||    
T  6474563 ttgtaccgatttgctcccttatgctttgctctgttactagttttagtcctttatgttagttt 6474502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 6474351 - 6474407
Alignment:
Q  8 caatttgatcccctatgtttt-gatttgttactagttttagtcctatatgttagttt 63  Q
    ||||||| ||||||||||||| | ||||||||||||||||||| | | |||||||||    
T  6474351 caatttggtcccctatgtttttgctttgttactagttttagtcttttctgttagttt 6474407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 39161352 - 39161402
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 51  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  39161352 tttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcct 39161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 50509411 - 50509363
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtc 49  Q
    |||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  50509411 tttgtaccaatttggtcccctatgttttgctttgttactaattttagtc 50509363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37996129 - 37996177
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtc 49  Q
    |||||| ||||||| |||||||||||||| ||||||| |||||||||||    
T  37996129 tttgtatcaatttggtcccctatgttttgctttgttattagttttagtc 37996177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 55173536 - 55173488
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtc 49  Q
    |||||||||||||| ||||||||| |||| ||||||||| |||||||||    
T  55173536 tttgtaccaatttggtcccctatgctttgctttgttacttgttttagtc 55173488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 47096863 - 47096924
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    ||||||||||||||  ||||||||||||| || |||||| ||||||||||| |||||| ||||    
T  47096863 tttgtaccaatttgc-cccctatgttttgcttcgttacttgttttagtcctttatgtttgttt 47096924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 39161436 - 39161484
Alignment:
Q  3 tgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 51  Q
    |||||||||||| |||| |||||||||||  ||| ||||||||||||||    
T  39161436 tgtaccaatttggtcccatatgttttgatccgttcctagttttagtcct 39161484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 40244689 - 40244752
Alignment:
Q  1 tttgtaccaatttgat-cccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||||||||||| | ||||||||||||| ||||||||||||||||||| | | |||||||||    
T  40244689 tttgtaccaatttggttcccctatgttttgctttgttactagttttagtcatttctgttagttt 40244752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 20538076 - 20538122
Alignment:
Q  3 tgtaccaatttgatcccctatgttttgatttgttactagttttagtc 49  Q
    |||||||||||| |||||||||||||| ||||||| |||||||||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagtc 20538122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 46003531 - 46003481
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 51  Q
    ||||||||||||||||||||| ||||||| ||  |||||||||||||||||    
T  46003531 tttgtaccaatttgatcccctttgttttgcttcattactagttttagtcct 46003481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 46003446 - 46003398
Alignment:
Q  3 tgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 51  Q
    |||||||||||| ||| |||||||||| || ||||||||||||||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtcct 46003398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20537990 - 20538040
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 51  Q
    ||||| |||||||| |||||||||||||| ||  |||||||||||||||||    
T  20537990 tttgttccaatttggtcccctatgttttgcttcattactagttttagtcct 20538040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 51663533 - 51663471
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    |||||| ||||||| ||| |||||||||| | ||||||||||||||||| | | |||||||||    
T  51663533 tttgtagcaatttggtcctctatgttttgctatgttactagttttagtcatttctgttagttt 51663471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51663314 - 51663362
Alignment:
Q  1 tttgtaccaatttgatcccctatgttttgatttgttactagttttagtc 49  Q
    |||||| ||||||  |||||||||||||| || ||||||||||||||||    
T  51663314 tttgtatcaatttagtcccctatgttttgcttcgttactagttttagtc 51663362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 21249427 - 21249488
Alignment:
Q  2 ttgtaccaatttgatcccctatgttttgatttgttactagttttagtcctatatgttagttt 63  Q
    ||||||||||||  |||||||||||||| || ||||||||||||| |||| | |||||||||    
T  21249427 ttgtaccaatttagtcccctatgttttgcttcgttactagttttaatcctttctgttagttt 21249488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 21249511 - 21249559
Alignment:
Q  3 tgtaccaatttgatcccctatgttttgatttgttactagttttagtcct 51  Q
    |||||||||||| |||| ||||||||| | |||||||||||||||||||    
T  21249511 tgtaccaatttggtcccttatgttttgctctgttactagttttagtcct 21249559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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