View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15701_low_1 (Length: 863)
Name: NF15701_low_1
Description: NF15701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15701_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 19 - 612
Target Start/End: Complemental strand, 6817895 - 6817309
Alignment:
| Q |
19 |
ggtagagaaaatccaaaggaggaagaaaaaacttattcgggctaagcaagtaatgaatgaactgattcagcgcgcttctttatacaagtatgattttaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6817895 |
ggtagagaaaatccaaaggaggaagaaaaaacttattcgggctaagcaagtaatgaatgaactgattcagtgcgcttctttatacaagtatgattttaca |
6817796 |
T |
|
| Q |
119 |
ggaccaagtcctcatgttgaagatcatggtggtgataacatgggtaaaataaagagctatacagaaaatgaggctattgagaaaaggagaacagtgtcac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6817795 |
ggaccaagtcctcatgttgaagatcatggtggtgataacatggataaaataaagagcaatacagaaaatgaggctattgcgaaaaggagaacagtgtcac |
6817696 |
T |
|
| Q |
219 |
ctattttaattgcagcaaagatgggagtgactgaaatgattgaaaagattctagatgtgtaccctgtggctattcaagatgtggacagtcagaacaaaaa |
318 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6817695 |
caattttaatcgcagcaaagatgggagtgactgaaatgattgaaaagattctagatgtgtaccctgtggctattcaagatgtggtcagtcagaacaaaaa |
6817596 |
T |
|
| Q |
319 |
tgttgttcttttggccatagaaaataggcaacctcatgtatacagtttgttaaataggaggagtataatcaaggaaactgcatttcgtcaagttgatatc |
418 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| ||||||||||| ||||||||||| || |
|
|
| T |
6817595 |
tgttgttcttttggccatagagaataggcaacctcatgtatatagtttgttaaatgagaggagaataatcaaggagactgcatttcg-----------tc |
6817507 |
T |
|
| Q |
419 |
aatggtaacagtgcattgcaccttgctgctacttatagacggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggt |
518 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6817506 |
aatggtaacggtgcattgcaccttgctgctacttatagaaggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggt |
6817407 |
T |
|
| Q |
519 |
ataaggtaaagagtatttctccatttttaattatttgtcttctct----tatagtttagaaatcttcacaaactagcaatttgtcatgtcacatagga |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6817406 |
ataaggtaaagagtatttctccatttttaattatttgtcttctcttatatatagtttagaaatcttcacaaactagcaatttgtcatgtcacatagga |
6817309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 19 - 603
Target Start/End: Complemental strand, 6809766 - 6809183
Alignment:
| Q |
19 |
ggtagagaaaatccaaaggaggaagaaaaaacttattcgggctaagcaagtaatgaatgaactgattcagcgcgcttctttatacaagtatgattttaca |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||| |
|
|
| T |
6809766 |
ggtagagaaaatccaaaggaggaaggaaaaacatattcgggctaagcaagtaatgaatgaactgattcagcatgcttctttattcaagtatgatttcaca |
6809667 |
T |
|
| Q |
119 |
ggaccaagtcctcatgttgaagatcatggtggtgataacatgggtaaaataaagagctatacagaaaatgaggctattgagaaaaggagaacagtgtcac |
218 |
Q |
| |
|
||||||||| || |||||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
6809666 |
ggaccaagttctaatgttgaagagaatggtggtgatgacataggtaaaataaagagcaatacagaaaatgaggctattgcgaaaaggagaacaatgtcac |
6809567 |
T |
|
| Q |
219 |
ctattttaattgcagcaaagatgggagtgactgaaatgattgaaaagattctagatgtgtaccctgtggctattcaagatgtggacagtcagaacaaaaa |
318 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6809566 |
caattttaatcgcagcaaagatgggagtgactgaaatgattgaaaagattctagatgtgtaccctgtggctattcaagatgtggacagtcagaacaaaaa |
6809467 |
T |
|
| Q |
319 |
tgttgttcttttggccatagaaaataggcaacctcatgtatacagtttgttaaataggaggagtataatcaaggaaactgcatttcgtcaagttgatatc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6809466 |
tgttgttcttttggccatagaaaataggcaacctcatgtatacagtttgttaaataagaggagtataatcaaggaaactgcatttcgtcaagttgatatc |
6809367 |
T |
|
| Q |
419 |
aatggtaacagtgcattgcaccttgctgctacttatagacggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggt |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6809366 |
aatggtaacagtgcattgcaccttgctgctacttatagaaggtttaagccttggcgtgtacctggtgcggcaatgcaaatgcagtgggaatacaagtggt |
6809267 |
T |
|
| Q |
519 |
ataaggtaaagagtatttctccatttttaattatttgtcttctcttatagtttagaaatcttcacaaactagcaatttgtcatgt |
603 |
Q |
| |
|
|||||||||||| ||||||||||| |||| |||||| | || | |||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6809266 |
ataaggtaaagattatttctccatatttagttatttaccctc-cctataatttagaaattttcacaaactagcaatttgtcatgt |
6809183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 526
Target Start/End: Complemental strand, 6832409 - 6831902
Alignment:
| Q |
19 |
ggtagagaaaatccaaaggaggaagaaaaaacttattcgggctaagcaagtaatgaatgaactgattcagcgcgcttctttatacaagtatgattttaca |
118 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6832409 |
ggtagagaaaatccaaaggaagaaggaaaaacacattcgggctaagcaagtgatgaatgaactgattcagcacgcttctttatacaagtatgattttaca |
6832310 |
T |
|
| Q |
119 |
ggaccaagtcctcatgttgaagatcatggtggtgataacatgggtaaaataaagagctatacagaaaatgaggctattgagaaaaggagaacagtgtcac |
218 |
Q |
| |
|
||||||||||||| ||||||||| | |||||||| | |||| | ||||||||||||| ||||||||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
6832309 |
ggaccaagtcctcgtgttgaagaacttggtggtggtgacatagataaaataaagagcaatacagaaaatgaagttattgagaaaaggagaatggtgtcac |
6832210 |
T |
|
| Q |
219 |
ctattttaattgcagcaaagatgggagtgactgaaatgattgaaaagattctagatgtgtaccctgtggctattcaagatgtggacagtcagaacaaaaa |
318 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
6832209 |
caattttaattgcagcaaagatgggagtgactgaaatgattgaaaatattctagacatgtaccctgtggctattcacgatgtggacagtcagaacaagaa |
6832110 |
T |
|
| Q |
319 |
tgttgttcttttggccatagaaaataggcaacctcatgtatacagtttgttaaataggaggagtataatcaaggaaactgcatttcgtcaagttgatatc |
418 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||||||||||| |
|
|
| T |
6832109 |
tgttgttcttttggccatagagaataggcaacctcatgtatacagtttgttaaataagaggagtgtaatcaaagagactgcatttcgtcaagttgatatc |
6832010 |
T |
|
| Q |
419 |
aatggtaacagtgcattgcaccttgctgctacttatagacggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggt |
518 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6832009 |
aatggtaacagtgcattgcatcttgctgctacttataggaggtttaagccttggcgtgtgcccggtgctgcaatgcaaatgcagtgggaatacaagtggt |
6831910 |
T |
|
| Q |
519 |
ataaggta |
526 |
Q |
| |
|
|||||||| |
|
|
| T |
6831909 |
ataaggta |
6831902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 688 - 847
Target Start/End: Complemental strand, 6817292 - 6817133
Alignment:
| Q |
688 |
tgaaccaagccgcactgagaaaaccgaactgtaattgacagttcacgaacttaaccagtttggtgcagttcaatttgtgaactatctatcacagtttggt |
787 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
6817292 |
tgaaccaagccgcactgagaaaaccaaactgtaattgacagttcacgaacttaaccagtttggtgcagttcaattcgtgaactatctgtcacagtttggt |
6817193 |
T |
|
| Q |
788 |
tattttaggtgcagttcaattcggtttttggtctatttaaacaatcctaaggtccgattt |
847 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6817192 |
tcttttaggtgcagttcaattcggtttttggtctatttaaacaatcctaaggtccgattt |
6817133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University