View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15701_low_3 (Length: 413)
Name: NF15701_low_3
Description: NF15701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15701_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 402
Target Start/End: Complemental strand, 7920042 - 7919659
Alignment:
| Q |
20 |
tctcatatggacatgtgaggttgtatgattctaattgttttcgaaatttttcattctagaaatcattaacaatgttaaactaccattccttttnnnnnnn |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7920042 |
tctcatatggacatgtgaggttgtatgattctaattgttttcgaaatttttcattctagaaatcattaacaatgttaaactaccatttcttttaaaaaaa |
7919943 |
T |
|
| Q |
120 |
-tgaaataaactatcatgctgtctttaaaaactaaactgtatttatgccaaaaccaccaccactacattgaatttttaacttttctcctcttctctaaca |
218 |
Q |
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||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7919942 |
atgaaataaactatcatggtgtctctaaaaacgaaactgtatttatgccaaaaccaccaccactgcattgaatttttaacttttctcctcttctctaaca |
7919843 |
T |
|
| Q |
219 |
acacatcatagtgactaaaacaactttgttttctcatccacaaggatcttgagaattggtgaagcatttaggaaattgtatacatagatctacgtctttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7919842 |
acacatcatagtgactaaaacaactttgttttctgatccacaaggatcttgagaattggtgaagcatttaggaaattgtatacatagatctacgtctttc |
7919743 |
T |
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| Q |
319 |
ataaaactcatgtaatcagatttatttcatgagaggaatggtaccacatgccaaaatcgattaaactctctcgttgtagttcat |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
7919742 |
ataaaactcatgtaatcagatttatttcatgagaggaatggtaccacatgccaaaatcgattcaactctcccgctgtagttcat |
7919659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 402
Target Start/End: Complemental strand, 43276968 - 43276586
Alignment:
| Q |
20 |
tctcatatggacatgtgaggttgtatgattctaattgttttcgaaatttttcattctagaaatcattaacaatgttaaactaccattccttttnnnnnnn |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43276968 |
tctcatatggacatgtgaggttgtatgattctaattgttttcgaaaattttcattctagaaatcattaacaatgttaaactaccattcctttaaaaacaa |
43276869 |
T |
|
| Q |
120 |
tgaaataaactatcatgctgtctttaaaaactaaactgtatttatgccaaaaccaccaccactacattgaatttttaacttttctcctcttctctaacaa |
219 |
Q |
| |
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||||||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43276868 |
tgaaataaactatcatggtgtctctaaaaacgaaactttatttatgccaaaaccaccaccactacattgaatttttaacttttctcctcttctctaacaa |
43276769 |
T |
|
| Q |
220 |
cacatcatagtgactaaaacaactttgttttctcatccacaaggatcttgagaattggtgaagcatttaggaaattgtatacatagatctacgtctttca |
319 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43276768 |
cacatcatagtgactaaaacaactttgttttctgatccacaaggatcttgagaattggtgaagcatttaggaaattgtatacatagatctacgtctttca |
43276669 |
T |
|
| Q |
320 |
taaaactcatgtaatcagatttatttcatgagaggaatggtaccacatgccaaaatcgattaaactctctcgttgtagttcat |
402 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| |
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| T |
43276668 |
taaaacttatgtaatcagatttatttcatgagaggaatggtaccacatgccaaaatcgattcaactttcccgttgtagttcat |
43276586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 156 - 402
Target Start/End: Complemental strand, 17958998 - 17958742
Alignment:
| Q |
156 |
tgtatttatgccaaaaccaccaccactacattgaatttttaa-cttttctcctcttctctaacaacacatcatagtgactaaaacaactttgttttctca |
254 |
Q |
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|||||||||| ||||||||||||| || ||||||||||| |||| ||||||||| ||||||||||| |||| ||||| ||||| | |||||||||| |
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| T |
17958998 |
tgtatttatggcaaaaccaccaccgctgtattgaatttttttgctttgctcctcttcgctaacaacacaccataatgactgaaacagcattgttttctcc |
17958899 |
T |
|
| Q |
255 |
tccacaaggatcttgagaattggtgaagcatttaggaaattgtatacatagatctacgtctttcataaaactcat--gtaat-------cagatttattt |
345 |
Q |
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||||||| || |||||||||||||| | ||||||||||| | |||||||||||||| | |||||||||| |||| | ||| || | |||||| |
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| T |
17958898 |
tccacaatgaacttgagaattggtggatcatttaggaaactctatacatagatctatgcttttcataaaaatcataggcaatcaatgcacatagttattt |
17958799 |
T |
|
| Q |
346 |
catgagaggaatggtaccacatgccaaaatcgattaaactctctcgttgtagttcat |
402 |
Q |
| |
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|||||||||||||| |||| ||| |||||||||| |||||| | ||||||||||| |
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| T |
17958798 |
catgagaggaatggaaccatatgtaaaaatcgattcaactcttccattgtagttcat |
17958742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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