View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15701_low_4 (Length: 365)
Name: NF15701_low_4
Description: NF15701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15701_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 11746562 - 11746230
Alignment:
| Q |
19 |
catcttagccggcaactcttaccacaacgaagaaggcctgaaagaaacgaaaaaacttaaaatcgtcaaagaaaggaatgcaatgtgtatcaagcaaaat |
118 |
Q |
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| T |
11746562 |
catcttagccggcaactcttaccacaacgaagaaggcctgaaagaaacgaaaaaacttaaaatcgtcaaagaaaggaatgcaatgtgtatcaagcaaaat |
11746463 |
T |
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| Q |
119 |
cacaatttatatgaccaactattctttagttttttgcaagattttatattgcagttgcggtcgtgatcattgatgttgcaaaaaatgtggtcaaatacta |
218 |
Q |
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| T |
11746462 |
cacaatttatatgaccaactattctttagttttttgcaagattttatattgcagttgcggtcgcgatcattgatgttacaaaaaatgtggtcaaatacta |
11746363 |
T |
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| Q |
219 |
ttgttgcataaacaacatgaaaacattaacctcatatttagaacacataatggttatataatcacagagagacaacatattgcttgtaaaggtgtaaact |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
11746362 |
ttgttgcataaacaacatgaaaacattaacctcatatttagaacacataatggttatataatcac----agacaacatattgcttgtaaaggtgt-aact |
11746268 |
T |
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| Q |
319 |
ttccttctacttcaannnnnnncctttctcatattctt |
356 |
Q |
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||||||||||||||| |||||||||||||||| |
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| T |
11746267 |
ttccttctacttcaatttttttcctttctcatattctt |
11746230 |
T |
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