View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15702_low_1 (Length: 806)
Name: NF15702_low_1
Description: NF15702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15702_low_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 699; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 18 - 806
Target Start/End: Complemental strand, 30770256 - 30769471
Alignment:
| Q |
18 |
gttgttgttttcaagcagagtcagtgattctacttgagattctaagttattgcttgaatcaccactagcaggaacattatcaagattcacaaaagaatct |
117 |
Q |
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| T |
30770256 |
gttgttgttttcaagcagagtcaatgattctacttgagattccaagttattgcttgaatcac---tagcaggaacactatcaagattcacaaaagaatct |
30770160 |
T |
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| Q |
118 |
cctgcagaatctgacacacctcttgagagaatccctgagttgttgagtgcatcaacaaaccatgtctcagattttgcatcatcaagaagtgatcccattg |
217 |
Q |
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| T |
30770159 |
cctgctgaatctgacacacctcttgagagaatccctgagttgttgagtgcatcaacaaaccatgtctcagattttgcatcatcaagaagtgatcccattg |
30770060 |
T |
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| Q |
218 |
aaagtgtggactctggttttgtgaagaacaagaacactcttagtcttgatgatgaaggtttcatggtagaagatgcagatgctatacgatcatattcttc |
317 |
Q |
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| T |
30770059 |
aaagtgtggtatctggttttgtgaagaacaaaaacactcttagtcttgatgatgaaggtttcattgtagaagatgccgatgctatacgatcatattcttc |
30769960 |
T |
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| Q |
318 |
aatcatgttatcaagatcttcatctgatgttactgtaatgaggttatcaaggtcttcattaggaagctggtacttgagagtaaagggtcttccattgaga |
417 |
Q |
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| T |
30769959 |
aatcatgttatcaagatcttcatctgatgttactgtaatgaggttatcaaggtcttcatttggaagctggtacttgagagtaaagggtcttccattgaga |
30769860 |
T |
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| Q |
418 |
attgttctcgaaaggcgtgaacataggtctctcagagaagaactgcgatccacgaccacgattctggtgtcaccgcctacataacataaagacttatcgt |
517 |
Q |
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| T |
30769859 |
attgttctcgaaagacgcgaacataggtctctcagagaagaactgcgatccacgaccacgattctggtgtcaccacctacataacatagagacttatcat |
30769760 |
T |
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| Q |
518 |
gagggcgcggcattatgtggcctccgtagctgcacatgagccgaagcttgcctccggggacattagggaaggaatcgtcgttcattgtttcattaacgcg |
617 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30769759 |
gagggcgcggcattatgtggcctccgtagctgcacattagccgaagcttgcctccggggacattagggaaggaatcgtcgttcattgtttcattaacgcg |
30769660 |
T |
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| Q |
618 |
tgatcgtggtggtggctgtggtggtggcgatgataaagactcgaccgattcaggatagttttgttggatgatgttatgaggaatggtggttgcggcggtg |
717 |
Q |
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| T |
30769659 |
tgatcgtggtggtggctgtggtggtggcgatgataaagactcgaccgattcaggatagttttgttggatgatgttatgaggaatggtggttgcggcggtg |
30769560 |
T |
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| Q |
718 |
gagataagtggtggatccattagaattggtgagttttggaataaaatgaaacggagcggaacagaacagaatagagtctctgatcactc |
806 |
Q |
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| T |
30769559 |
gagataagcggtggatccattagaattggtgagttttggaataaaatgaaacggagcggaacagaacaggatggagtctctgatcactc |
30769471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 409
Target Start/End: Original strand, 44884380 - 44884434
Alignment:
| Q |
355 |
atgaggttatcaaggtcttcattaggaagctggtacttgagagtaaagggtcttc |
409 |
Q |
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| T |
44884380 |
atgaggttgtcaaggtcttcattgggaagatggtacttgagagtgaaaggtcttc |
44884434 |
T |
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