View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15702_low_2 (Length: 359)
Name: NF15702_low_2
Description: NF15702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15702_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 23 - 352
Target Start/End: Original strand, 5159436 - 5159757
Alignment:
| Q |
23 |
ggggaatagttcttacagatttatttattgaaaattatatctctaactatgtactctcnnnnnnnn-ctgcagatgttcaacatttgaaaaacttgaaaa |
121 |
Q |
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| T |
5159436 |
ggggaatagttcttacagatttatttattgaaa-ttatatctctaactatgtactctctttttttttctgcagatgttcaacatttgaaaaacttgaaaa |
5159534 |
T |
|
| Q |
122 |
tgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggttttg |
221 |
Q |
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| T |
5159535 |
tgttaactttaagctataatcaaatgaacggctcaattgaaggtatgaatactaccaaacacaaataattaattcataactgcttcacgg---------- |
5159624 |
T |
|
| Q |
222 |
gagatggattgttacaatgaagataacttttttatcgattttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattgacgc |
317 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
5159625 |
--gatggattgttacaatgaagataacttttttattgattttaaattttaaataattaacaaaaacaatgaaataagttaattaatgtatatattgacgc |
5159722 |
T |
|
| Q |
318 |
cattggaaaaactttaagatttttatgatgatgtc |
352 |
Q |
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| T |
5159723 |
cattggaaaaactttaagatttttatgataatgtc |
5159757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 352
Target Start/End: Original strand, 5195065 - 5195403
Alignment:
| Q |
23 |
ggggaatagttcttacagatttatttattgaaaattatatctctaactatgtactctcnnnnnnnn----ctgcagatgttcaacatttgaaaaacttga |
118 |
Q |
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| T |
5195065 |
ggggaatagttcttaccgatttatttattgaaaattatatctctaactatgtactctctttttttttcttctgcagatgttcaacatttgaaaaatttga |
5195164 |
T |
|
| Q |
119 |
aaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggtt |
218 |
Q |
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| T |
5195165 |
aaatgttaagtttaaacgataatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatggtt |
5195264 |
T |
|
| Q |
219 |
ttggagatggattgttacaatgaagataacttttttatcgattttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattga |
314 |
Q |
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|||| ||| ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| |||||||| || ||||||||||||| |
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| T |
5195265 |
ttggggatcgattgttacaatgaagataacttttttttttattttaaattttaaataattaacaaaaacaacgaaataagttaattaatgtatatattga |
5195364 |
T |
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| Q |
315 |
cgccattggaaaaac-tttaagatttttatgatgatgtc |
352 |
Q |
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| T |
5195365 |
cgccattggaaaaacttttaagatttttatgataatgtc |
5195403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 62 - 352
Target Start/End: Original strand, 5181710 - 5182005
Alignment:
| Q |
62 |
tctctaactatgtactctcnnnnnnnnctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattca |
161 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |
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| T |
5181710 |
tctctaactatgtactctctttttttcctgcagatgttcaacatttgaaaaacttgaaaatgttaagtttaagaaataatcaaatgaacggctcaattga |
5181809 |
T |
|
| Q |
162 |
aggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggttttggagatggattgttacaatgaagataacttttttatcgatt |
261 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |
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| T |
5181810 |
aggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatggttttggggatggattgttacaatgaagataacttttatattgatt |
5181909 |
T |
|
| Q |
262 |
ttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattgacgccattggaaaaac-tttaagatttttatgatgatgtc |
352 |
Q |
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||| ||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
5181910 |
ttaaattttaaataattaacaaaaagaatgaaataagttaattaatgtatatattgacgccattggaaaaacttttaagatttttatgataatgtc |
5182005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 5172489 - 5172594
Alignment:
| Q |
90 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataa |
189 |
Q |
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||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| |
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| T |
5172489 |
tgcagatgttcaacacttgaaaaaattgaaaatgttaagtttaagctataatcaaatgaacggctcaattgaaggtatcaatactatcaaacataaataa |
5172588 |
T |
|
| Q |
190 |
ttaatt |
195 |
Q |
| |
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|||||| |
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| T |
5172589 |
ttaatt |
5172594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 90 - 195
Target Start/End: Complemental strand, 4843133 - 4843028
Alignment:
| Q |
90 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataa |
189 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||| ||||||| |||||| |||||| |
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| T |
4843133 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaaggttaagcgataatcaaatgaagggctcaattgaaggtatcaatactatcaaacataaataa |
4843034 |
T |
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| Q |
190 |
ttaatt |
195 |
Q |
| |
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|||||| |
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| T |
4843033 |
ttaatt |
4843028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 5212716 - 5212815
Alignment:
| Q |
91 |
gcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataat |
190 |
Q |
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||||||||||||||||||| ||||||||||||| ||| |||| || | |||||||||||||||||| || ||||||| |||| ||||||||||||||||| |
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| T |
5212716 |
gcagatgttcaacatttgagaaacttgaaaatgctaagtttatgcaacaatcaaatgaacggctcacttgaaggtattaatattaccaaacacaaataat |
5212815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 277 - 351
Target Start/End: Complemental strand, 4842927 - 4842849
Alignment:
| Q |
277 |
ttaacaaaaacaatgaaataagt----tgatgtatatattgacgccattggaaaaactttaagatttttatgatgatgt |
351 |
Q |
| |
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||||||||||||||||||||||| | || |||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
4842927 |
ttaacaaaaacaatgaaataagtaaattaatttatatattgagtccattggaaaaactttaagatttttatgataatgt |
4842849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 5172630 - 5172677
Alignment:
| Q |
305 |
tatatattgacgccattggaaaaactttaagatttttatgatgatgtc |
352 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
5172630 |
tatatattgagtccattggaaaaactttaagatttttatgataatgtc |
5172677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 4843183 - 4843149
Alignment:
| Q |
45 |
atttattgaaaattatatctctaactatgtactct |
79 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
4843183 |
atttattgaatattatatctctaactatgtactct |
4843149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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