View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15702_low_6 (Length: 247)
Name: NF15702_low_6
Description: NF15702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15702_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 47385438 - 47385564
Alignment:
| Q |
105 |
tggtggttggaatttccttgatgctctttcaaataatatatatcaaaacacatggaaaaaagaaaccacaacaaccacctatgtgcatcctcaacagaaa |
204 |
Q |
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| T |
47385438 |
tggtggttggaatttccttgatggtctttcaaataatatatatcaaaacacatggaaaaaagaaaccacaacaaccacctatgtgcatcctcaacagaaa |
47385537 |
T |
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| Q |
205 |
cgttcatctttggctatgagtccaaag |
231 |
Q |
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| T |
47385538 |
cgttcctctttggctatgagtccaaag |
47385564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 47373491 - 47373365
Alignment:
| Q |
105 |
tggtggttggaatttccttgatgctctttcaaataatatatatcaaaacacatggaaaaaagaaaccacaacaaccacctatgtgcatcctcaacagaaa |
204 |
Q |
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|||||||||||| |||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||||| | | ||||| ||||| |
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| T |
47373491 |
tggtggttggaacttccttgacgctctttccaataatatagctcaaaacacatcaaaaaaagaaaccacaacagccacctatcttccccctcagcagaag |
47373392 |
T |
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| Q |
205 |
cgttcatctttggctatgagtccaaag |
231 |
Q |
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| T |
47373391 |
tgttcctctttggttctgagtccaaag |
47373365 |
T |
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