View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15703_high_2 (Length: 704)

Name: NF15703_high_2
Description: NF15703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15703_high_2
NF15703_high_2
[»] chr4 (14 HSPs)
chr4 (13-206)||(27565447-27565640)
chr4 (410-688)||(27565636-27565916)
chr4 (164-243)||(27426384-27426463)
chr4 (14-147)||(27569308-27569445)
chr4 (489-538)||(27412996-27413045)
chr4 (54-120)||(27420925-27420995)
chr4 (485-555)||(27569808-27569879)
chr4 (485-538)||(27415957-27416010)
chr4 (91-136)||(27416380-27416425)
chr4 (488-584)||(27426090-27426187)
chr4 (633-680)||(27569959-27570006)
chr4 (163-292)||(27416186-27416314)
chr4 (82-114)||(27413449-27413481)
chr4 (641-681)||(27425994-27426034)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 27565447 - 27565640
Alignment:
Q  13 attctagctgtaaatatgtgggtgactcatctataaagagggccattattctaaaacatcttgtggctctgaaaatctataagacaacaccatgtggtgg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27565447 attctagctgtaaatatgtgggtgactcatctataaagagggccattattctaaaacatcttgtggctctgaaaatctataagacaacaccatgtggtgg 27565546  T
Q  113 tttgtgagctgttgtctctcactacagcccatcataatctataagtactgatgtcattcagtaaaatagtttaccttgttactgaattgttatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27565547 tttgtgagctgttgtctctcactacagcccatcataatctataagtactgatgtcattcagtaaaatagtttaccttgttactgaattgttatt 27565640  T

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Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 410 - 688
Target Start/End: Original strand, 27565636 - 27565916
Alignment:
Q  410 ttattatgtcgtttttagattactaagttgnnnnnnncttatagtaagcaacatttctcatattgtcaaactcatttcttaagtgcaataaaccaaaaac 509  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27565636 ttattatgtcgtttttagattactaagttgtttttttcttatagtaagcaacatttctcatattgtcaaactcatttcttaagtgcaataaaccaaaaac 27565735  T
Q  510 atagaagagctgcttgaatagtcgaattc-ttgtcgttaaacaaaattgatatacaatttatcaatctaatggtcannnnnnngcatctttacaa-ttga 607  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| ||||    
T  27565736 atagaagagctgcttgaatagtcgaattcattgtcgttaaacaaaattgatatacaatttatcaatctaatggtcatttttttgcatctttacaatttga 27565835  T
Q  608 tacgatgcctagtttacnnnnnnntaaatatccctactaaactatgtcagtctattttggtgttaggttcatagttcattc 688  Q
    || ||||||||||||||       |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  27565836 taagatgcctagtttacaaaaaaataaatatccctactaaactatgtcagtctaatttggtgttaggttcatagtccattc 27565916  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 27426463 - 27426384
Alignment:
Q  164 tgtcattcagtaaaatagtttaccttgttactgaattgttattgtgcacctgtttcttatgaagggaaggtacctcatgt 243  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||| ||||  ||||||||||||| ||||||||||    
T  27426463 tgtcattcagtgaaataattgaccttgttactgaattgttattgtgcacttgttctttatgaagggaagttacctcatgt 27426384  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 27569308 - 27569445
Alignment:
Q  14 ttctagctgtaaatatgtgggtgactcatctataaagagggccattattctaaaacatcttgtggctc----tgaaaatctataagacaacaccatgtgg 109  Q
    |||||||  ||||||||| ||||||||||||| |||| |||||||||||||||||  ||||||| |||    |||||||||| ||||||| |||||||||    
T  27569308 ttctagcaataaatatgtaggtgactcatctacaaagcgggccattattctaaaatctcttgtgactcttgatgaaaatctacaagacaaaaccatgtgg 27569407  T
Q  110 tggtttgtgagctgttgtctctcactacagcccatcat 147  Q
    ||||| || ||  ||| ||||||| || | ||||||||    
T  27569408 tggttcgtcagtcgttttctctcagtaaatcccatcat 27569445  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 489 - 538
Target Start/End: Complemental strand, 27413045 - 27412996
Alignment:
Q  489 taagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattc 538  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||    
T  27413045 taagtgcaataaaccaaaaacatagaagagttacttgaatagtcgaattc 27412996  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 27420995 - 27420925
Alignment:
Q  54 gccattattctaaaacatcttgtggctct----gaaaatctataagacaacaccatgtggtggtttgtgag 120  Q
    |||||||||||||||  ||||||| ||||    |||||||||||||||||||||||||||||||| |||||    
T  27420995 gccattattctaaaatctcttgtgtctcttgatgaaaatctataagacaacaccatgtggtggttagtgag 27420925  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 485 - 555
Target Start/End: Original strand, 27569808 - 27569879
Alignment:
Q  485 ttcttaagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattc-ttgtcgttaaacaaaat 555  Q
    |||||||||||||||||||||||||| ||| ||| |  |||| ||||||||||| ||||| |||||||||||    
T  27569808 ttcttaagtgcaataaaccaaaaacagagaggagatatttgagtagtcgaattcattgtcattaaacaaaat 27569879  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 538
Target Start/End: Complemental strand, 27416010 - 27415957
Alignment:
Q  485 ttcttaagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattc 538  Q
    |||| |||||||||||||||||||  |||| ||||||||||| |||||||||||    
T  27416010 ttctgaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattc 27415957  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 27416425 - 27416380
Alignment:
Q  91 ataagacaacaccatgtggtggtttgtgagctgttgtctctcacta 136  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||    
T  27416425 ataagacagcaccatgtggtggttcttgagctgttgtctctcacta 27416380  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 584
Target Start/End: Complemental strand, 27426187 - 27426090
Alignment:
Q  488 ttaagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattc-ttgtcgttaaacaaaattgatatacaatttatcaatctaatggtca 584  Q
    |||||||| ||||||||||||| || ||||||||||||| |||| |||||| || || ||||||||||   || ||||||||   |||||||||||||    
T  27426187 ttaagtgcgataaaccaaaaacgtaaaagagctgcttgagtagttgaattcattctcattaaacaaaacatatttacaatttgctaatctaatggtca 27426090  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 680
Target Start/End: Original strand, 27569959 - 27570006
Alignment:
Q  633 aaatatccctactaaactatgtcagtctattttggtgttaggttcata 680  Q
    ||||||| |||||||||||||||||||| || ||||||||| ||||||    
T  27569959 aaatatcactactaaactatgtcagtctcttctggtgttagattcata 27570006  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 292
Target Start/End: Complemental strand, 27416314 - 27416186
Alignment:
Q  163 atgtcattcagtaaaatagtttaccttgttactgaattgttattgtgcacctgtttcttatgaagggaaggtacctcatgtatgactaaggctttggtac 262  Q
    |||||||||||| ||||| ||| |||||||  ||||||| ||||||| || |||   ||||||| |||| |||| ||||||| || ||| ||||||| ||    
T  27416314 atgtcattcagtgaaataatttcccttgttgatgaattggtattgtgtacttgt---ttatgaaaggaatgtacttcatgtaagattaaagctttggcac 27416218  T
Q  263 -ccaacatttgaa-ttcatgtctgtattatgt 292  Q
     |||| |||| || ||||||||| ||||||||    
T  27416217 tccaaaattttaatttcatgtctatattatgt 27416186  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 27413481 - 27413449
Alignment:
Q  82 tgaaaatctataagacaacaccatgtggtggtt 114  Q
    ||||||||||||||||||||||||||| |||||    
T  27413481 tgaaaatctataagacaacaccatgtgatggtt 27413449  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 641 - 681
Target Start/End: Complemental strand, 27426034 - 27425994
Alignment:
Q  641 ctactaaactatgtcagtctattttggtgttaggttcatag 681  Q
    |||||||||||||||||||| ||||||||| || |||||||    
T  27426034 ctactaaactatgtcagtctgttttggtgtcagattcatag 27425994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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