View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15703_high_5 (Length: 478)
Name: NF15703_high_5
Description: NF15703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15703_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 14 - 460
Target Start/End: Complemental strand, 36149400 - 36148954
Alignment:
| Q |
14 |
gaacactctcctaatcaaggacaagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcatgaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149400 |
gaacactctcctaatcaaggacaagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcatgaag |
36149301 |
T |
|
| Q |
114 |
ttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatcatatgaacg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149300 |
ttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatcatatgaacg |
36149201 |
T |
|
| Q |
214 |
tttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatccaaccctagcaccaggtcacttgacccgtttacgt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149200 |
tttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatccaaccctagcaccaggtcacttgacccgtttacgt |
36149101 |
T |
|
| Q |
314 |
gctgcaaatgtcgacactgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggagaccaagtaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149100 |
gctgcaaatgtcgacactgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggagaccaagtaa |
36149001 |
T |
|
| Q |
414 |
gttctatctctctcatattggtcacaccaaatggttaatactataat |
460 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149000 |
gttctatcactctcatattggtcacaccaaatggttaatactataat |
36148954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 105 - 425
Target Start/End: Complemental strand, 36083412 - 36083092
Alignment:
| Q |
105 |
tgcatgaagttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatc |
204 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
36083412 |
tgcatgaagtggaagcaattctagaatacgaatttaagaacatactattgctagaagaggctttcactcactgtacttacggtgctgagaatggcttatc |
36083313 |
T |
|
| Q |
205 |
atatgaacgtttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatccaaccctagcaccaggtcacttgacc |
304 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
36083312 |
ttatgagcgtttggaatacataggtgattcagttcttaacctaatgataacaacggaacaatttcatgcatatccaacgctggcaccaggtcacttgacc |
36083213 |
T |
|
| Q |
305 |
cgtttacgtgctgcaaatgtcgacactgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggag |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||| ||||||||| |||| |||||||| || || ||||||| |
|
|
| T |
36083212 |
cgtttacgtgctgcaaatgtcgacactgaaaaacttgcacgtgtagccatcaaatatggtttacatcgttatgtgcgtcacaaaaagccactgcttggag |
36083113 |
T |
|
| Q |
405 |
accaagtaagttctatctctc |
425 |
Q |
| |
|
|| ||||||||||| |||||| |
|
|
| T |
36083112 |
acgaagtaagttctctctctc |
36083092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 320 - 415
Target Start/End: Complemental strand, 36173567 - 36173472
Alignment:
| Q |
320 |
aatgtcgacactgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggagaccaagtaagt |
415 |
Q |
| |
|
||||| ||| ||||||| |||||||||||||| ||||| ||||| ||| ||||||||||||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
36173567 |
aatgtggactctgaaaagctggcacgtgtggctatcaaacatggattggatcgttatttgcgtcacaaaaaacctcaacttggagaggaagtaagt |
36173472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 415
Target Start/End: Complemental strand, 36160257 - 36160161
Alignment:
| Q |
319 |
aaatgtcgacactgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggagaccaagtaagt |
415 |
Q |
| |
|
|||||| ||| ||||||| |||||||| ||||| ||||| ||||| ||| ||||||||||||| |||||||| || | ||||||||| ||||||||| |
|
|
| T |
36160257 |
aaatgtggactctgaaaagctggcacgagtggctatcaatcatgggttggatcgttatttgcgtcacaaaaagccacaacttggagagcaagtaagt |
36160161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 36 - 174
Target Start/End: Original strand, 26527625 - 26527763
Alignment:
| Q |
36 |
aagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcatgaagttgaagccattcttgaatacga |
135 |
Q |
| |
|
|||||| || |||| |||||||| |||||| |||||| |||||| |||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
26527625 |
aagaagaagaacacatgaaggaaaatgagaatgatgcggagacagaagaaaatgattctccaccaccaccgcatgaagtggaagccattcttgaatacga |
26527724 |
T |
|
| Q |
136 |
atttaagaacaaactattactagaagaggctttcactca |
174 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26527725 |
attcaagaacaaactattactagaagaggctttcactca |
26527763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 10489715 - 10489788
Alignment:
| Q |
332 |
gaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggaga |
405 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||| || ||||||||||||||||||| |||| ||||||||| |
|
|
| T |
10489715 |
gaaaaactggcacgtgtggctatcaaacatgggttggatggttatttgcgacacaaaaagcctcaacttggaga |
10489788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 320 - 415
Target Start/End: Complemental strand, 17453819 - 17453724
Alignment:
| Q |
320 |
aatgtcgacactgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggagaccaagtaagt |
415 |
Q |
| |
|
||||| ||| || |||||| ||||||||||| ||||| ||||| ||| |||||||||||||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
17453819 |
aatgtggactctaaaaaacacgcacgtgtggctatcaaacatgggttgggtcgttatttgcgacacaaaaaacctcaacttgcagagcaagtaagt |
17453724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 405
Target Start/End: Original strand, 17454712 - 17454787
Alignment:
| Q |
330 |
ctgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggaga |
405 |
Q |
| |
|
|||||||||||||| |||| || ||||| ||||| ||| |||||||||||| ||||||||| |||| ||||||||| |
|
|
| T |
17454712 |
ctgaaaaactggcatgtgtagctatcaaacatgggttggatcgttatttgcaacacaaaaagcctcaacttggaga |
17454787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University