View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15703_high_9 (Length: 331)
Name: NF15703_high_9
Description: NF15703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15703_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 36149382 - 36149690
Alignment:
| Q |
1 |
cttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccatggtgtgtgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36149382 |
cttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccattgtgtgtgg |
36149481 |
T |
|
| Q |
101 |
aattacttcgacaccatgcagtggtggcggcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149482 |
aattacttcgacaccatgcagtggtggcggcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttct |
36149581 |
T |
|
| Q |
201 |
tctttgtcatctattttgagtgcatatgtgtaattgacaagttcttcttctcggtctttgtgaatttgagcttccatgatgtgtggaatcacttccactt |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149582 |
tctttgtcatctattttgagtgcacatgtgtaattgacaagtgcttcttcttggtctttgtgaatttgagcttccatgatgtgtggaatcacttccactt |
36149681 |
T |
|
| Q |
301 |
cttgcagct |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
36149682 |
cttgcagct |
36149690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 36083446 - 36083533
Alignment:
| Q |
145 |
gagaatcattttccatcatgggaacttcttcttgt---tgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
229 |
Q |
| |
|
|||||||| ||||| ||||| | |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
36083446 |
gagaatcactttccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttgagtgcacatgt |
36083533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 229
Target Start/End: Original strand, 36149636 - 36149799
Alignment:
| Q |
69 |
tctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcggcggtg------aaggaggcggagaatcattttccatca |
162 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||| ||||| || | ||||| ||||||| |||| ||||||||||||||||| ||||| ||| |
|
|
| T |
36149636 |
tctttgtgaatttgagcttccatgatgtgtggaatcacttccacttcttgcagctgtggcggtggtggtggtgaaggaggcggagaatcactttccttca |
36149735 |
T |
|
| Q |
163 |
tgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
229 |
Q |
| |
|
| | ||||||| || | | || |||||| ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
36149736 |
tttgcacttctttttctagcttgggagag---tcttcttctttctcatctattttgagtgcacatgt |
36149799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 36149759 - 36149822
Alignment:
| Q |
9 |
ggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
72 |
Q |
| |
|
||||||| ||||||||| || |||||||| ||||| |||||||||| || ||||||||||||| |
|
|
| T |
36149759 |
ggagagtcttcttctttctcatctattttgagtgcacatgtttggaggagaagtgcttcttctt |
36149822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26527612 - 26527381
Alignment:
| Q |
1 |
cttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccatggtgtgtgg |
100 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| || |
|
|
| T |
26527612 |
cttgcttaggagactgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacatgagcttccatggtgtgggg |
26527513 |
T |
|
| Q |
101 |
aattacttcgacaccatgcagtggtggcg------gcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgt |
194 |
Q |
| |
|
||| ||||| || ||| ||| |||||| | ||||||||||||||| ||||| |||| ||||| | ||||||| || | | || |||||||| |
|
|
| T |
26527512 |
aatcacttccacttcatacagcagtggcggtggtagtggtgaaggaggcggaaaatcactttcattcatgtgcacttctttttctagcttgggagagtg- |
26527414 |
T |
|
| Q |
195 |
tcttcttctttgtcatctattttgagtgcatatgt |
229 |
Q |
| |
|
||||||| | |||||||||||||||||| |||| |
|
|
| T |
26527413 |
--ttcttctatctcatctattttgagtgcacatgt |
26527381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 26527421 - 26527358
Alignment:
| Q |
9 |
ggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
72 |
Q |
| |
|
||||||||||||||| | || |||||||| ||||| |||||||||| || ||||||||||||| |
|
|
| T |
26527421 |
ggagagtgttcttctatctcatctattttgagtgcacatgtttggaggagaagtgcttcttctt |
26527358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 26527544 - 26527498
Alignment:
| Q |
255 |
tctttgtgaatttgagcttccatgatgtgtggaatcacttccacttc |
301 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||||||||||||||||| |
|
|
| T |
26527544 |
tctttgtgaacatgagcttccatggtgtggggaatcacttccacttc |
26527498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University