View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15703_low_1 (Length: 734)

Name: NF15703_low_1
Description: NF15703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15703_low_1
NF15703_low_1
[»] chr4 (5 HSPs)
chr4 (1-435)||(21372659-21373093)
chr4 (1-435)||(21384465-21384898)
chr4 (578-726)||(21373756-21373904)
chr4 (431-543)||(21373614-21373726)
chr4 (587-712)||(36253104-36253228)
[»] chr3 (3 HSPs)
chr3 (586-719)||(54873628-54873761)
chr3 (586-719)||(55429825-55429958)
chr3 (590-653)||(40583947-40584010)
[»] chr6 (1 HSPs)
chr6 (586-719)||(7020703-7020834)
[»] chr8 (1 HSPs)
chr8 (586-719)||(15918936-15919070)
[»] chr2 (1 HSPs)
chr2 (586-719)||(37785267-37785400)


Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 21372659 - 21373093
Alignment:
Q  1 tttggaatcattccattcatatcaagaagatcattgggaattatatcaggtttaacaggtgcaggtggaaactttggttcaggattaacgcagttggtan 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||     
T  21372659 tttggaatcattccattcatatcaagaagatcattgggaattatatcaggtttaacaggtgcaggtggaaactttggttctggattaacacagttgatat 21372758  T
Q  101 nnnnnncaagctcaaaattttcaacagcttcaggtctttcatggatgggtgcaatgattgttggttgtacacttccggttgcttttgttcattttccaca 200  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21372759 ttttttcaagctcaaaattttcaacagcttcaggtctttcatggatgggtgcaatgattgttggttgtacacttccagttgcttttgttcattttccaca 21372858  T
Q  201 gtggggtagcatgttccttccaccttcaaaagagatcaatgaagaacactattacacttctgaatggaatgaagatgaagtacagaaaggtttgcatcaa 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21372859 gtggggtagcatgttccttccagcttcaaaagagatcaatgaagaacactattacacttctgaatggaatgaagatgaagtacagaaaggtttgcatcaa 21372958  T
Q  301 ccaagtcttaggtttgctgagaatagtcgttctgagagaggtaagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtaca 400  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21372959 ccaagtcttaggtttgctgagaatagtcgttctgagagaggaaagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtaca 21373058  T
Q  401 agttatatgccccactttatttgtttaaagtttaa 435  Q
    |||||||||||||||||||||||||||||||||||    
T  21373059 agttatatgccccactttatttgtttaaagtttaa 21373093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 21384898 - 21384465
Alignment:
Q  1 tttggaatcattccattcatatcaagaagatcattgggaattatatcaggtttaacaggtgcaggtggaaactttggttcaggattaacgcagttggtan 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||     
T  21384898 tttggaatcattccattcatatcaagaagatctttgggaattatatcaggtttaacaggtgcaggtggaaactttggttctggattaacacagttgatat 21384799  T
Q  101 nnnnnncaagctcaaaattttcaacagcttcaggtctttcatggatgggtgcaatgattgttggttgtacacttccggttgcttttgttcattttccaca 200  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21384798 ttttttcaagctcaaaattttcaacagcttcaggtctttcatggatgggtgcaatgattgttggttgtacacttccagttgcttttgttcattttccaca 21384699  T
Q  201 gtggggtagcatgttccttccaccttcaaaagagatcaatgaagaacactattacacttctgaatggaatgaagatgaagtacagaaaggtttgcatcaa 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21384698 gtggggtagcatgttccttccagcttcaaaagagatcaatgaagaacactattacacttctgaatggaatgaagatgaagtacagaaaggtttgcatcaa 21384599  T
Q  301 ccaagtcttaggtttgctgagaatagtcgttctgagagaggtaagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtaca 400  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21384598 ccaagtcttaggtttgctgagaatagtcgttctgagagaggaaagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtaca 21384499  T
Q  401 agttatatgccccacttta-tttgtttaaagtttaa 435  Q
    |||  |||||||||||||| ||||||||||||||||    
T  21384498 agt--tatgccccactttattttgtttaaagtttaa 21384465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 578 - 726
Target Start/End: Original strand, 21373756 - 21373904
Alignment:
Q  578 ctcccaacctagaatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatattcaaaaatttagattcaggtcttctgctaat 677  Q
    ||||||| ||||||||||||||||||||||||||||||||||  |||||| |||||| |||||||||||||||||||||||||||| |||||||||||||    
T  21373756 ctcccaagctagaatagtgaaagaggtgttagagagtttttgtcatgcttttgggttgaaagttaatattcaaaaatttagattcatgtcttctgctaat 21373855  T
Q  678 atcgcaagaggcaaagtgaataaattttcttctatcgttcatctcactc 726  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21373856 atcgcaagaggcaaagtgaataaattttcttctatcgttcatttcactc 21373904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 431 - 543
Target Start/End: Original strand, 21373614 - 21373726
Alignment:
Q  431 tttaaaaccatgagatttcgctttaaagtttaatctaccatacaaaatgaattttgactttgtcaacaatattcgtcacattgagctctttctaggcaaa 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21373614 tttaaaaccatgagatttcgctttaaagtttaatctaccatacaaaatgaattttgactttgtcaacaatattcgtcacattgagctctttctaggcaaa 21373713  T
Q  531 attactttaagca 543  Q
    |||||||||||||    
T  21373714 attactttaagca 21373726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 587 - 712
Target Start/End: Complemental strand, 36253228 - 36253104
Alignment:
Q  587 tagaatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatattcaaaaatttagattcaggtcttctgctaatatcgcaaga 686  Q
    ||||||| ||||||||||| |||| ||||||||  |||||||||| || ||||||||||||||||||| |||||||| ||||  | |||||||  | | |    
T  36253228 tagaatattgaaagaggtggtagaaagtttttgtcatgcttctgg-ttaaaagttaatattcaaaaatctagattcatgtctaatcctaatatttccaaa 36253130  T
Q  687 ggcaaagtgaataaattttcttctat 712  Q
      |||||||||||||||| |||||||    
T  36253129 aacaaagtgaataaatttgcttctat 36253104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 2e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 586 - 719
Target Start/End: Original strand, 54873628 - 54873761
Alignment:
Q  586 ctagaatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatattcaaaaatttagattcaggtcttctgctaatatcgcaag 685  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||||||||||| || |||||||| |||||||||||||||| | ||    
T  54873628 ctagaatagtgaaagaggtattagagagtttttgtcatgcttctgggttgaaagttaatattcaaatatctagattcatgtcttctgctaatatctctag 54873727  T
Q  686 aggcaaagtgaataaattttcttctatcgttcat 719  Q
    | ||||||||||||||||||||||||||||||||    
T  54873728 aagcaaagtgaataaattttcttctatcgttcat 54873761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 586 - 719
Target Start/End: Complemental strand, 55429958 - 55429825
Alignment:
Q  586 ctagaatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatattcaaaaatttagattcaggtcttctgctaatatcgcaag 685  Q
    ||||||||||||||||||| ||| ||||||||||  ||||||||||||| ||||||||||||||||||| ||||||||  |||| |||||||||| | ||    
T  55429958 ctagaatagtgaaagaggtcttaaagagtttttgtcatgcttctgggttaaaagttaatattcaaaaatctagattcatatcttatgctaatatctctag 55429859  T
Q  686 aggcaaagtgaataaattttcttctatcgttcat 719  Q
    | ||||||||||||||||||||||||||||||||    
T  55429858 aagcaaagtgaataaattttcttctatcgttcat 55429825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 590 - 653
Target Start/End: Original strand, 40583947 - 40584010
Alignment:
Q  590 aatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatattcaaaaa 653  Q
    |||| |||||||| ||||||| ||||||||  |||||||| |||| ||||||||||||||||||    
T  40583947 aataatgaaagagatgttagatagtttttgtaatgcttctcggttaaaagttaatattcaaaaa 40584010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 586 - 719
Target Start/End: Original strand, 7020703 - 7020834
Alignment:
Q  586 ctagaatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatattcaaaaatttagattcaggtcttctgctaatatcgcaag 685  Q
    |||||||||||||||||||||  |||||||||||  ||||||||||||| |||||||||||||| |||| |||||||| |||||||||||||||| | ||    
T  7020703 ctagaatagtgaaagaggtgt--gagagtttttgtcatgcttctgggttgaaagttaatattcagaaatctagattcatgtcttctgctaatatctccag 7020800  T
Q  686 aggcaaagtgaataaattttcttctatcgttcat 719  Q
    || |||||||||||||||||||||||||||||||    
T  7020801 agacaaagtgaataaattttcttctatcgttcat 7020834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 586 - 719
Target Start/End: Complemental strand, 15919070 - 15918936
Alignment:
Q  586 ctagaatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatatt-caaaaatttagattcaggtcttctgctaatatcgcaa 684  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||  |||||| || ||||| |||||||||||||||| | |    
T  15919070 ctagaatagtgaaacaggtgttagagagtttttgtcatgcttctgggttgaaagttaatattaaaaaaatctaaattcatgtcttctgctaatatctcta 15918971  T
Q  685 gaggcaaagtgaataaattttcttctatcgttcat 719  Q
    ||   |||||||||||||||||||||||| |||||    
T  15918970 gaaaaaaagtgaataaattttcttctatcattcat 15918936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 586 - 719
Target Start/End: Complemental strand, 37785400 - 37785267
Alignment:
Q  586 ctagaatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatattcaaaaatttagattcaggtcttctgctaatatcgcaag 685  Q
    ||||||||||||||||||||||| |||| ||||   |||||||||| || ||||||||||||||||||| |||||||| || || | |||||||| | ||    
T  37785400 ctagaatagtgaaagaggtgttaaagagattttttcatgcttctggattgaaagttaatattcaaaaatctagattcatgttttatactaatatctctag 37785301  T
Q  686 aggcaaagtgaataaattttcttctatcgttcat 719  Q
    |  ||||||||| ||||||  |||||| ||||||    
T  37785300 aaacaaagtgaaaaaatttgtttctattgttcat 37785267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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