View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15703_low_13 (Length: 276)
Name: NF15703_low_13
Description: NF15703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15703_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 44691757 - 44691504
Alignment:
| Q |
18 |
ggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgttgtagccgaagag |
117 |
Q |
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|||||| |||||||||||||| |||||||||||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
44691757 |
ggaatggcatgaagatttggtataattgaagttttagaaagtaacaaaccagcctttgtcttggtctcacatttgatatccaattgttgaacccgaagag |
44691658 |
T |
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| Q |
118 |
agagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttctttcatagccac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44691657 |
agagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggatgaagcaccttttcaaatttcccaaaaccttctttcatagccac |
44691558 |
T |
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| Q |
218 |
ttgagattgatcaacttgcacgcaacacacaagattccccattttcttctcact |
271 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
44691557 |
ttgagattgatcaacttgcacgcaacacacaatattccccattttcttttcact |
44691504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 44682079 - 44681830
Alignment:
| Q |
18 |
ggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgttgtagccgaagag |
117 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| |||||||| |
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| T |
44682079 |
ggaatgacatgaagatttggtttaattgatgtttgagacagtaacaaac----ctttgtctttgtctcacacttgatatccaattgttgtacccgaagag |
44681984 |
T |
|
| Q |
118 |
agagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttctttcatagccac |
217 |
Q |
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| T |
44681983 |
agagatgaccagcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaattttccaaaaccttctttcatagccac |
44681884 |
T |
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| Q |
218 |
ttgagattgatcaacttgcacgcaacacacaagattccccattttcttctcact |
271 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
44681883 |
ttgagattgatcaacttgcacacaacacacaagattccccattttcttttcact |
44681830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 44653065 - 44652816
Alignment:
| Q |
18 |
ggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgttgtagccgaagag |
117 |
Q |
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||||||||||||| | ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44653065 |
ggaatgacatgaacacttggtttaattgatgtttgagaccgtaac----gaacctttgtcttggtctcacatttgatatccaattgttgtacccgaagag |
44652970 |
T |
|
| Q |
118 |
agagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttctttcatagccac |
217 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44652969 |
agagatgaccagcaattctttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaattttccaaaaccttctttcatagccac |
44652870 |
T |
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| Q |
218 |
ttgagattgatcaacttgcacgcaacacacaagattccccattttcttctcact |
271 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
44652869 |
ttgagattgatcaacttgcacacaacacacaagattccccattttcttttcact |
44652816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 44637261 - 44637508
Alignment:
| Q |
18 |
ggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgttgtagccgaagag |
117 |
Q |
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|||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
44637261 |
ggaatgacgtgaagatttcgttaaattgaagttttagacagtaacaaacgaacctttgtcttggtctcacattttatatccaattgctgtagccgaagag |
44637360 |
T |
|
| Q |
118 |
agagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttctttcatagccac |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||||||| |
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| T |
44637361 |
agagatgaccagcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccctctttcatagccac |
44637460 |
T |
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| Q |
218 |
ttgagattgatcaacttgcacgcaacacacaagattccccattttctt |
265 |
Q |
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| |||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
44637461 |
tgtagattgatcaacttgcacacaacacaaaagattccccattttctt |
44637508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 44631579 - 44631338
Alignment:
| Q |
17 |
aggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgttgtagccgaaga |
116 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44631579 |
aggaatgacatgaagatttggttgaattaaagtttgagacagtaacaaa---acctttgtcttggtctcacattttatatccaattgttgtagccgaagg |
44631483 |
T |
|
| Q |
117 |
gagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttctttcatagcca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||| |
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| T |
44631482 |
gagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccttctctcatagcca |
44631383 |
T |
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| Q |
217 |
cttgagattgatcaacttgcacgcaacacacaagattccccattt |
261 |
Q |
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| ||| |||||||||||||||||||||| |||||||||||||| |
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| T |
44631382 |
ccgtagactgatcaacttgcacgcaacacaaaagattccccattt |
44631338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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