View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15703_low_14 (Length: 272)
Name: NF15703_low_14
Description: NF15703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15703_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 47820282 - 47820022
Alignment:
| Q |
1 |
gtaaccaccttaatattctccacaatatccaccacctccggattccgattattgaaaatcttgtcattcctagctttccataaaacccaaatcgtcgcat |
100 |
Q |
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| T |
47820282 |
gtaaccaccttaatatcctccacaatatccaccaccaa---attccgattattgaagatcttgtcattcctagctttccataaaacccaaatcgtcgcat |
47820186 |
T |
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| Q |
101 |
gccaaattaatcttaacccccgacgaatactcttcttcctctccccaccgcaccatcactcccataagacaaataaattcggcgggattacaataaaact |
200 |
Q |
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| T |
47820185 |
gccaaattaatcttaacccccgacgaatactcttcttcctctccccaccgcaccaacactcccataagataaataaatttggcgggattacaataaaact |
47820086 |
T |
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| Q |
201 |
ctcccaccaccccatcatgtcacgccacacccttccggcaacttcacaatgaagaaaatgatga |
264 |
Q |
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| T |
47820085 |
ctcccaccaccccatcatgtcacgccacacccttccggcaacttcgcaatgaagaaaaggatga |
47820022 |
T |
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Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 37035625 - 37035368
Alignment:
| Q |
7 |
accttaatattctccacaatatccaccacctccggattccgattattgaaaatcttgtcattcctagctttccataaaacccaaatcgtcgcatgccaaa |
106 |
Q |
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| T |
37035625 |
accttaatatcctccacaatatccaccacctccggattccgattattaaaaatcttgtcatttctagctttccataaaacccaaatcgtaacatgccaaa |
37035526 |
T |
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| Q |
107 |
ttaatcttaacccccgacgaatactcttcttcctctccccaccgcaccatcactcccataagacaaataaattcggcgggattacaataaaactctccca |
206 |
Q |
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| T |
37035525 |
ttaatcttaacccctgacgaatacgcttaatcctctccccgccactccaacactcccataagacaaataaattaggcggaattacaataaacctctccca |
37035426 |
T |
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| Q |
207 |
ccaccccatcatgtcacgccacacccttccggcaacttcacaatgaagaaaatgatga |
264 |
Q |
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| T |
37035425 |
ccaccccataatatcacgccacacccttccggcaacctcacaatggagaaaaagatga |
37035368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 34774684 - 34774782
Alignment:
| Q |
66 |
attcctagctttccataaaacccaaatcgtcgcatgccaaattaatcttaacccccgacgaatactcttcttcctctccccaccgcaccatcactccca |
164 |
Q |
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| T |
34774684 |
attcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactccca |
34774782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 42748870 - 42748968
Alignment:
| Q |
66 |
attcctagctttccataaaacccaaatcgtcgcatgccaaattaatcttaacccccgacgaatactcttcttcctctccccaccgcaccatcactccca |
164 |
Q |
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| T |
42748870 |
attcctagctttccataacacccaaatcgtggtatgccaaataagccttaatccgctacgagttctcttattcctctcccctccgctccaacactccca |
42748968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 6495440 - 6495387
Alignment:
| Q |
51 |
attgaaaatcttgtcattcctagctttccataaaacccaaatcgtcgcatgcca |
104 |
Q |
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| T |
6495440 |
attgaaaattttatcattcctagcattccatataacccaaatagccgcatgcca |
6495387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 190
Target Start/End: Original strand, 12825455 - 12825602
Alignment:
| Q |
43 |
ttccgattattgaaaatcttgtcattcctagctttccataaaacccaaatcgtcgcatgccaaattaatcttaacccccgacgaatactcttcttcctct |
142 |
Q |
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||||||||||| |||||||| |||||||| |||||||| |||||| || |||| | ||||| ||| | |||||| || ||| || | ||| ||||||| |
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| T |
12825455 |
ttccgattattaaaaatcttatcattccttgctttccacaaaaccaaactcgtagaatgccgaataagtcttaaaccattacggattcgcttattcctct |
12825554 |
T |
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| Q |
143 |
ccccaccgcaccatcactcccataagacaaataaattcggcgggatta |
190 |
Q |
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| T |
12825555 |
ctccaccacaccaacactcccaaagaacgaataaattaggcggaatta |
12825602 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 38553157 - 38553114
Alignment:
| Q |
52 |
ttgaaaatcttgtcattcctagctttccataaaacccaaatcgt |
95 |
Q |
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||||||||||| ||||||||||||||||| || ||||||||||| |
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| T |
38553157 |
ttgaaaatcttatcattcctagctttccacaacacccaaatcgt |
38553114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 40931564 - 40931607
Alignment:
| Q |
52 |
ttgaaaatcttgtcattcctagctttccataaaacccaaatcgt |
95 |
Q |
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|||||||| |||||||||||||||||||| ||||| |||||||| |
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| T |
40931564 |
ttgaaaattttgtcattcctagctttccacaaaactcaaatcgt |
40931607 |
T |
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