View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15703_low_18 (Length: 253)
Name: NF15703_low_18
Description: NF15703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15703_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 14260430 - 14260220
Alignment:
| Q |
23 |
tcggtgacatattggtcaacagtggccattatgatagacattgattcctgcaaattctcaaattagataaagaaatatacaacataaatttgtaaattca |
122 |
Q |
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| T |
14260430 |
tcggtgacatattggtcaacagtggccattatgatagacattgattcctgcaaattctcaaattagataaagaaatatacaacataaatttacaaattca |
14260331 |
T |
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| Q |
123 |
acaattgattgagaatattacagttggacagattctaagtgcagatagagtggttactcctattgagtacatccattgatctatattatgaaaccaagtt |
222 |
Q |
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| T |
14260330 |
acaattgattgagaatattacagttggacagattctaagtgcagatagagtggttactcctattgagtacatccattgatctatattatgaaaccaagtt |
14260231 |
T |
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| Q |
223 |
tcttccggact |
233 |
Q |
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||||||||||| |
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| T |
14260230 |
tcttccggact |
14260220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 26 - 207
Target Start/End: Original strand, 22136099 - 22136279
Alignment:
| Q |
26 |
gtgacatattggtcaacagtggccattatgatagacattgattcctgcaaattctcaaattagataaagaaatatacaacataaatttgtaaattcaaca |
125 |
Q |
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|||| |||||||||||||||| |||||||||||| ||| |||||||||||||||||| |||||| |||||||| || ||||||||||| |||||| || | |
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| T |
22136099 |
gtgatatattggtcaacagtgaccattatgatagccatcgattcctgcaaattctcacattaga-aaagaaatgtataacataaatttataaattaaata |
22136197 |
T |
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| Q |
126 |
attgattgagaatattacagttggacagattctaagtgcagatagagtggttactcctattgagtacatccattgatctata |
207 |
Q |
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| T |
22136198 |
attggttgagaaaattaccactagacagattctaagtgcaaatatagtggttactactgttgagtacacctattaatctata |
22136279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 19723997 - 19723964
Alignment:
| Q |
31 |
atattggtcaacagtggccattatgatagacatt |
64 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
19723997 |
atattggtcaacagtggtcattatgatagacatt |
19723964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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