View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15703_low_21 (Length: 226)
Name: NF15703_low_21
Description: NF15703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15703_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 21372666 - 21372461
Alignment:
| Q |
1 |
attccaaatgttgcaccacatgctgcttgtgctccaactgagaagagaatcatggatagtactgcgatcggaagtgtattcgcacgtcctaaccatatgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21372666 |
attccaaatgttgcaccacatgctgcttgtgctccaactgagaagaggatcatggatagtactgcgatcggaagtgtattcgcacgtcctaaccatatgc |
21372567 |
T |
|
| Q |
101 |
agaaaacccctcctagggtttggaggatccagagtgtccataatcttcctcgcatgccgaataatcttgctgcaacatctgatgcatatcctccgaatgg |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21372566 |
agaaaactcctcctagggtttggaggatccagagtgtccatattcttcctcgcattccgaataatcttgctgcaacatctgatgcatatcctccgaatgg |
21372467 |
T |
|
| Q |
201 |
acgagc |
206 |
Q |
| |
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|||||| |
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| T |
21372466 |
acgagc |
21372461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 21384891 - 21385096
Alignment:
| Q |
1 |
attccaaatgttgcaccacatgctgcttgtgctccaactgagaagagaatcatggatagtactgcgatcggaagtgtattcgcacgtcctaaccatatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21384891 |
attccaaatgttgcaccacatgctgcttgtgctccaactgagaagaggatcatggatagtactgcgatcggaagtgtattcgcacgtcctaaccatatgc |
21384990 |
T |
|
| Q |
101 |
agaaaacccctcctagggtttggaggatccagagtgtccataatcttcctcgcatgccgaataatcttgctgcaacatctgatgcatatcctccgaatgg |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21384991 |
agaaaactcctcctagggtttggaggatccagagtgtccataatcttcctcgcataccgaataatcttgctgcaacatctgatgcatatccaccgaatgg |
21385090 |
T |
|
| Q |
201 |
acgagc |
206 |
Q |
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|||||| |
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| T |
21385091 |
acgagc |
21385096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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