View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15703_low_22 (Length: 225)

Name: NF15703_low_22
Description: NF15703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15703_low_22
NF15703_low_22
[»] chr1 (17 HSPs)
chr1 (15-210)||(11005233-11005431)
chr1 (15-210)||(10901354-10901552)
chr1 (15-210)||(10993917-10994115)
chr1 (15-204)||(10979031-10979223)
chr1 (15-183)||(10903157-10903328)
chr1 (15-183)||(10914317-10914488)
chr1 (15-178)||(11028820-11028986)
chr1 (15-177)||(11010624-11010789)
chr1 (15-201)||(10932679-10932869)
chr1 (25-159)||(11032933-11033070)
chr1 (28-176)||(11007463-11007614)
chr1 (61-132)||(9255285-9255356)
chr1 (61-132)||(9348806-9348877)
chr1 (61-127)||(9318547-9318613)
chr1 (61-127)||(9319689-9319755)
chr1 (61-127)||(9350006-9350072)
chr1 (40-133)||(9488331-9488424)
[»] chr6 (1 HSPs)
chr6 (61-132)||(15927453-15927524)
[»] chr3 (1 HSPs)
chr3 (61-127)||(9159379-9159445)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 11005233 - 11005431
Alignment:
Q  15 cacagatgaagaaatgaaattggcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11005233 cacagatgaagaaatgaaattggcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgatt 11005332  T
Q  115 gagatgctt---gaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatctaccagctgaggattttagagatgataatact 210  Q
    |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11005333 gagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatctaccagctgaggattttagagatggtaatact 11005431  T

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Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 10901552 - 10901354
Alignment:
Q  15 cacagatgaagaaatgaaattggcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgatt 114  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||  |||||||||||  |||||||||||||||||||||||||||||    
T  10901552 cacagatgaagaaatgaaattggcaaagaaaacgatgattgtggcattatggtgtactcagacaaaacctagtgatcgtccttcaatggataaagtgatt 10901453  T
Q  115 gagatgcttg---aagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatctaccagctgaggattttagagatgataatact 210  Q
    ||||||||||   |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10901452 gagatgcttgcataagaagatggggatttgcaaatgcctaagaagccttacctttatccacaagatctaccagctgaggatttttgagatgataatact 10901354  T

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Target: chr1; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 10993917 - 10994115
Alignment:
Q  15 cacagatgaagaaatgaaattggcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||||||||||    
T  10993917 cacagatgaagaaatgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgatt 10994016  T
Q  115 gagatgctt---gaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatctaccagctgaggattttagagatgataatact 210  Q
    |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| |||||||||||| ||||    
T  10994017 gagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgttagagatgatagtact 10994115  T

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Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 10979223 - 10979031
Alignment:
Q  15 cacagatgaagaaatgaaattggcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgatt 114  Q
    ||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |  || ||||||||||||||||||||| |     
T  10979223 cacagatcaggaaataaaattggcaaagaaaatgatgattgtggctttgtggtgtatacagacaaaacccgacgaccgtccttcaatggataaagtgttg 10979124  T
Q  115 gagatgcttgaag---aagatggggatttgcaaatgcctaataagccttacctttatccacaagatctaccagctgaggattttagagatgat 204  Q
    |||||||||||||   |||||||||| |||||||| ||||||||||||||| ||| |  |||||||| |||||  |||||| || ||||||||    
T  10979123 gagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtttacaagatccaccagtagaggatgttggagatgat 10979031  T

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Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 10903328 - 10903157
Alignment:
Q  15 cacagatgaagaaatgaaattggcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgatt 114  Q
    ||||||| | ||||||||||||||||||||||||||||  |||||||| ||||||||||| |||||||| |  |||||||||||||||||||||||  |     
T  10903328 cacagatcaggaaatgaaattggcaaagaaaatgatgaccgtggctttgtggtgtatacaaacaaaacccgaggatcgtccttcaatggataaagttttg 10903229  T
Q  115 gagatgcttg---aagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatctacca 183  Q
    ||||||||||   ||||||||||||| || ||||| ||||||||||||||| ||| ||||||||||| ||||    
T  10903228 gagatgcttgaaaaagaagatggggacttacaaattcctaataagccttacttttgtccacaagatccacca 10903157  T

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Target: chr1; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 10914488 - 10914317
Alignment:
Q  15 cacagatgaagaaatgaaattggcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgatt 114  Q
    ||||||| | |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||  ||||||||||||||||| |||||  |     
T  10914488 cacagatcaggaaatgaaattggcaaagaaaatgatgattgtagctttgtggtgtatacaaacaaaaccagaggatcgtccttcaatggaaaaagttttg 10914389  T
Q  115 gagatgcttgaag---aagatggggatttgcaaatgcctaataagccttacctttatccacaagatctacca 183  Q
    |||||||||||||   ||||||| || |||||||| ||||||||||||||  ||| ||||||||||| ||||    
T  10914388 gagatgcttgaagaagaagatggagacttgcaaattcctaataagccttatttttgtccacaagatccacca 10914317  T

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Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 11028820 - 11028986
Alignment:
Q  15 cacagatgaagaaatgaaattggcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgatt 114  Q
    ||||||| | |||||||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||  |||||||||||||||||||||||  |     
T  11028820 cacagatcaggaaatgaaattggcaaagaaaatgatgactgcggctttgtggtgtatacaaacaaaaccagaggatcgtccttcaatggataaagttttg 11028919  T
Q  115 gagatgctt---gaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatc 178  Q
    |||||||||   ||||||||||| || |||||||| ||||||||||||||| ||| ||| |||||||    
T  11028920 gagatgcttgaagaagaagatggagacttgcaaattcctaataagccttacttttgtccgcaagatc 11028986  T

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Target: chr1; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 11010789 - 11010624
Alignment:
Q  15 cacagatgaagaaatgaaattggcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgatt 114  Q
    ||||||| | ||||||||  | ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||  |     
T  11010789 cacagatcaggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttg 11010690  T
Q  115 gagatgcttgaag---aagatggggatttgcaaatgcctaataagccttacctttatccacaagat 177  Q
    |||||||||||||   ||||||| || ||||| || ||||||||||||||| ||| ||||||||||    
T  11010689 gagatgcttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagat 11010624  T

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Target: chr1; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 10932869 - 10932679
Alignment:
Q  15 cacagatgaagaaatgaaattggcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgat- 113  Q
    ||||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| || |  ||||||||||||||||| |||||  |     
T  10932869 cacagatcaggaaatgaaattggcaaagaaaatgatgatcgtggctttgtggtgtatacaaacaaatcccgaggatcgtccttcaatggaaaaagtttta 10932770  T
Q  114 tgagatgctt---gaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatctaccagctgaggattttagagat 201  Q
     |||||||||   |||||||||||||| |||||||| ||||||||||||||| ||| ||||||||||| |||||  |||||| || |||||    
T  10932769 ggagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtccacaagatccaccagtagaggatgttggagat 10932679  T

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Target: chr1; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 159
Target Start/End: Complemental strand, 11033070 - 11032933
Alignment:
Q  25 gaaatgaaattggcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgattgagatgcttg 124  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||| ||| | |||||  ||||||||||| |||||||||||||| | ||||||||||    
T  11033070 gaaatgaaattggcaaagaaaatgatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtcctccaatggataaagtgttggagatgcttg 11032971  T
Q  125 aag---aagatggggatttgcaaatgcctaataagcct 159  Q
    |||   ||||||  ||||||||||||||||||||||||    
T  11032970 aagaagaagatgaagatttgcaaatgcctaataagcct 11032933  T

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Target: chr1; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 11007614 - 11007463
Alignment:
Q  28 atgaaattggcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgattgagatgcttgaag 127  Q
    |||||||||||||||||||||||||| |||||||| |||||||| ||  | |||||  ||||||||||| |||||||||||||| | |||||||||||||    
T  11007614 atgaaattggcaaagaaaatgatgatagtggctttgtggtgtattcaagcgaaacctagtgatcgtcctccaatggataaagtgttggagatgcttgaag 11007515  T
Q  128 ---aagatggggatttgcaaatgcctaataagccttacctttatccacaaga 176  Q
       ||||||  |||||||||||||||||| ||||| ||||| || |||||||    
T  11007514 aagaagatgaagatttgcaaatgcctaatcagcctgaccttgatgcacaaga 11007463  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 9255285 - 9255356
Alignment:
Q  61 ttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgattgagatgcttgaagaagat 132  Q
    ||||||||||||||    |||||| |||||||||| |||||| |||||||||| ||||||||||||| ||||    
T  9255285 ttatggtgtatacaattgaaaccatgtgatcgtccctcaatgaataaagtgatagagatgcttgaaggagat 9255356  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 9348806 - 9348877
Alignment:
Q  61 ttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgattgagatgcttgaagaagat 132  Q
    |||||||||||||||  ||||||| ||||||||||| ||||| ||||||| || |||||||| |||| ||||    
T  9348806 ttatggtgtatacagttaaaaccaagtgatcgtcctgcaatgaataaagtaatagagatgctcgaaggagat 9348877  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 9318547 - 9318613
Alignment:
Q  61 ttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgattgagatgcttgaag 127  Q
    ||||||||||||||    |||||| ||||||||||||||||| | |||||||| |||||||||||||    
T  9318547 ttatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgcttgaag 9318613  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 9319755 - 9319689
Alignment:
Q  61 ttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgattgagatgcttgaag 127  Q
    ||||||||||||||    |||||| ||||||||||||||||| | |||||||| |||||||||||||    
T  9319755 ttatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgcttgaag 9319689  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 9350072 - 9350006
Alignment:
Q  61 ttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgattgagatgcttgaag 127  Q
    ||||||||||||||    |||||| ||||||||||||||||| | |||||||| |||||||||||||    
T  9350072 ttatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgcttgaag 9350006  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 9488424 - 9488331
Alignment:
Q  40 aagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgattgagatgcttgaagaagatg 133  Q
    ||||| ||||| || || || ||||||||||||||||  ||||||  |||||||||||| ||| | |||||| ||||| | ||||||| |||||    
T  9488424 aagaagatgataatagttgcattatggtgtatacagatgaaaccaattgatcgtccttcgatgaacaaagtggttgagttacttgaaggagatg 9488331  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 15927453 - 15927524
Alignment:
Q  61 ttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgattgagatgcttgaagaagat 132  Q
    ||||||||||| ||   ||||||| ||||||||||||||||| | | |||||| ||||||||||||| ||||    
T  15927453 ttatggtgtattcaattaaaaccaagtgatcgtccttcaatgaacagagtgatagagatgcttgaaggagat 15927524  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 9159445 - 9159379
Alignment:
Q  61 ttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgattgagatgcttgaag 127  Q
    |||||||||||||||  ||||||| ||||||||||| ||||| | ||||| || |||||||| ||||    
T  9159445 ttatggtgtatacagttaaaaccaagtgatcgtcctgcaatgaacaaagtaatagagatgctcgaag 9159379  T

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