View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15703_low_3 (Length: 660)

Name: NF15703_low_3
Description: NF15703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15703_low_3
NF15703_low_3
[»] chr4 (13 HSPs)
chr4 (366-644)||(27565636-27565916)
chr4 (13-162)||(27565491-27565640)
chr4 (120-199)||(27426384-27426463)
chr4 (445-494)||(27412996-27413045)
chr4 (441-511)||(27569808-27569879)
chr4 (38-76)||(27420925-27420963)
chr4 (441-494)||(27415957-27416010)
chr4 (47-92)||(27416380-27416425)
chr4 (444-540)||(27426090-27426187)
chr4 (589-636)||(27569959-27570006)
chr4 (119-248)||(27416186-27416314)
chr4 (38-70)||(27413449-27413481)
chr4 (597-637)||(27425994-27426034)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 366 - 644
Target Start/End: Original strand, 27565636 - 27565916
Alignment:
Q  366 ttattatgtcgtttttagattactaagttgnnnnnnncttatagtaagcaacatttctcatattgtcaaactcatttcttaagtgcaataaaccaaaaac 465  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27565636 ttattatgtcgtttttagattactaagttgtttttttcttatagtaagcaacatttctcatattgtcaaactcatttcttaagtgcaataaaccaaaaac 27565735  T
Q  466 atagaagagctgcttgaatagtcgaattc-ttgtcgttaaacaaaattgatatacaatttatcaatctaatggtcannnnnnngcatctttacaa-ttga 563  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| ||||    
T  27565736 atagaagagctgcttgaatagtcgaattcattgtcgttaaacaaaattgatatacaatttatcaatctaatggtcatttttttgcatctttacaatttga 27565835  T
Q  564 tacgatgcctagtttacnnnnnnntaaatatccctactaaactatgtcagtctattttggtgttaggttcatagttcattc 644  Q
    || ||||||||||||||       |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  27565836 taagatgcctagtttacaaaaaaataaatatccctactaaactatgtcagtctaatttggtgttaggttcatagtccattc 27565916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 27565491 - 27565640
Alignment:
Q  13 attattctaaaacatcttgtggctctgaaaatctataagacaacaccatgtggtggtttgtgagctgttgtctctcactacagcccatcataatctataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27565491 attattctaaaacatcttgtggctctgaaaatctataagacaacaccatgtggtggtttgtgagctgttgtctctcactacagcccatcataatctataa 27565590  T
Q  113 gtactgatgtcattcagtaaaatagtttaccttgttactgaattgttatt 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27565591 gtactgatgtcattcagtaaaatagtttaccttgttactgaattgttatt 27565640  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 27426463 - 27426384
Alignment:
Q  120 tgtcattcagtaaaatagtttaccttgttactgaattgttattgtgcacctgtttcttatgaagggaaggtacctcatgt 199  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||| ||||  ||||||||||||| ||||||||||    
T  27426463 tgtcattcagtgaaataattgaccttgttactgaattgttattgtgcacttgttctttatgaagggaagttacctcatgt 27426384  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 445 - 494
Target Start/End: Complemental strand, 27413045 - 27412996
Alignment:
Q  445 taagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattc 494  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||    
T  27413045 taagtgcaataaaccaaaaacatagaagagttacttgaatagtcgaattc 27412996  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 441 - 511
Target Start/End: Original strand, 27569808 - 27569879
Alignment:
Q  441 ttcttaagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattc-ttgtcgttaaacaaaat 511  Q
    |||||||||||||||||||||||||| ||| ||| |  |||| ||||||||||| ||||| |||||||||||    
T  27569808 ttcttaagtgcaataaaccaaaaacagagaggagatatttgagtagtcgaattcattgtcattaaacaaaat 27569879  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 27420963 - 27420925
Alignment:
Q  38 tgaaaatctataagacaacaccatgtggtggtttgtgag 76  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  27420963 tgaaaatctataagacaacaccatgtggtggttagtgag 27420925  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 441 - 494
Target Start/End: Complemental strand, 27416010 - 27415957
Alignment:
Q  441 ttcttaagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattc 494  Q
    |||| |||||||||||||||||||  |||| ||||||||||| |||||||||||    
T  27416010 ttctgaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattc 27415957  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 27416425 - 27416380
Alignment:
Q  47 ataagacaacaccatgtggtggtttgtgagctgttgtctctcacta 92  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||    
T  27416425 ataagacagcaccatgtggtggttcttgagctgttgtctctcacta 27416380  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 444 - 540
Target Start/End: Complemental strand, 27426187 - 27426090
Alignment:
Q  444 ttaagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattc-ttgtcgttaaacaaaattgatatacaatttatcaatctaatggtca 540  Q
    |||||||| ||||||||||||| || ||||||||||||| |||| |||||| || || ||||||||||   || ||||||||   |||||||||||||    
T  27426187 ttaagtgcgataaaccaaaaacgtaaaagagctgcttgagtagttgaattcattctcattaaacaaaacatatttacaatttgctaatctaatggtca 27426090  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 636
Target Start/End: Original strand, 27569959 - 27570006
Alignment:
Q  589 aaatatccctactaaactatgtcagtctattttggtgttaggttcata 636  Q
    ||||||| |||||||||||||||||||| || ||||||||| ||||||    
T  27569959 aaatatcactactaaactatgtcagtctcttctggtgttagattcata 27570006  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 248
Target Start/End: Complemental strand, 27416314 - 27416186
Alignment:
Q  119 atgtcattcagtaaaatagtttaccttgttactgaattgttattgtgcacctgtttcttatgaagggaaggtacctcatgtatgactaaggctttggtac 218  Q
    |||||||||||| ||||| ||| |||||||  ||||||| ||||||| || |||   ||||||| |||| |||| ||||||| || ||| ||||||| ||    
T  27416314 atgtcattcagtgaaataatttcccttgttgatgaattggtattgtgtacttgt---ttatgaaaggaatgtacttcatgtaagattaaagctttggcac 27416218  T
Q  219 -ccaacatttgaa-ttcatgtctgtattatgt 248  Q
     |||| |||| || ||||||||| ||||||||    
T  27416217 tccaaaattttaatttcatgtctatattatgt 27416186  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 27413481 - 27413449
Alignment:
Q  38 tgaaaatctataagacaacaccatgtggtggtt 70  Q
    ||||||||||||||||||||||||||| |||||    
T  27413481 tgaaaatctataagacaacaccatgtgatggtt 27413449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 597 - 637
Target Start/End: Complemental strand, 27426034 - 27425994
Alignment:
Q  597 ctactaaactatgtcagtctattttggtgttaggttcatag 637  Q
    |||||||||||||||||||| ||||||||| || |||||||    
T  27426034 ctactaaactatgtcagtctgttttggtgtcagattcatag 27425994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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