View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15703_low_6 (Length: 425)

Name: NF15703_low_6
Description: NF15703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15703_low_6
NF15703_low_6
[»] chr7 (3 HSPs)
chr7 (8-425)||(12825305-12825723)
chr7 (52-196)||(35400749-35400893)
chr7 (180-305)||(35024563-35024688)
[»] chr4 (3 HSPs)
chr4 (37-415)||(37035334-37035710)
chr4 (213-405)||(24189326-24189517)
chr4 (58-113)||(24189605-24189660)
[»] chr3 (2 HSPs)
chr3 (49-278)||(47820122-47820348)
chr3 (267-305)||(28571641-28571679)
[»] chr6 (2 HSPs)
chr6 (180-397)||(34774684-34774900)
chr6 (53-279)||(11779930-11780156)
[»] chr1 (2 HSPs)
chr1 (180-397)||(42748870-42749086)
chr1 (47-78)||(47318630-47318661)
[»] chr8 (1 HSPs)
chr8 (169-209)||(38553114-38553154)


Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Original strand, 12825305 - 12825723
Alignment:
Q  8 agaagcaaaggtagttaaagcagccacgtaaggcattcc-tcggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgacc 106  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12825305 agaaccaaaggtagttaaagcagccgcgtaaggcattccctcggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgacc 12825404  T
Q  107 accgccaagtcaacccctttacatcatccaccatttcatccaccgccgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaat 206  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12825405 accgccaagtcaacacctttacatcatccaccatttcatccaccgctgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaact 12825504  T
Q  207 cgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaatgaacgaataaattaggcggaattaaa 306  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12825505 cgtagaatgccgaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaaagaacgaataaattaggcggaattaaa 12825604  T
Q  307 tgaaacttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgatgattcatccaccgtctcacaa 406  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12825605 tgaaacttatcccatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgacgattcatccaccgtctcacaa 12825704  T
Q  407 aaggtacaacactgaggag 425  Q
    |||||||||||||||||||    
T  12825705 aaggtacaacactgaggag 12825723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 196
Target Start/End: Complemental strand, 35400893 - 35400749
Alignment:
Q  52 ttccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatccaccg 151  Q
    |||||||||||||| ||||||||||| || |||||||| ||||||||||| | ||| | ||||| |||  |||| |||||||||||||||||| ||||      
T  35400893 ttccaacaccattcgtaatacatacacggtggcatagagattctatccaaagcccatctccaagacaaaaccttgacatcatccaccatttcacccacat 35400794  T
Q  152 ccgagttccgattattaaaaatcttatcattccttgctttccaca 196  Q
     ||  || || |||||||||| |||||||||||| ||||||||||    
T  35400793 acggatttcggttattaaaaaccttatcattcctcgctttccaca 35400749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 35024563 - 35024688
Alignment:
Q  180 attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa 279  Q
    |||||| |||||||| || ||| |||||||   |||||||||||| |||||  | |||||  ||| |||||||||||| || ||  ||||||||||||||    
T  35024563 attcctagctttccataacacccaaatcgtaatatgccaaataagccttaattcgttacgagttctcttattcctctcccctccgaaccaacactcccaa 35024662  T
Q  280 tgaacgaataaattaggcggaattaa 305  Q
     | | ||| || ||||| ||||||||    
T  35024663 aggatgaagaagttagggggaattaa 35024688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 37 - 415
Target Start/End: Complemental strand, 37035710 - 37035334
Alignment:
Q  37 aaggcattcc-tcggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatcc 135  Q
    |||||||||| |||||| ||||||||| |||||  |||||||||||||||| | |||| | |||||||||||||||||||||||  |||| | ||| |||    
T  37035710 aaggcattccctcggatcccaacaccactcatagaacatacaaggaggcattgcaattatctccaacgaccaccgccaagtcaataccttaatatcctcc 37035611  T
Q  136 accatttcatccaccgccgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccat 235  Q
    || || ||  ||||| |||  |||||||||||||||||||| ||||| || |||||||| |||||| |||||||   ||||||||| | |||||| || |    
T  37035610 acaatatccaccacctccggattccgattattaaaaatcttgtcatttctagctttccataaaacccaaatcgtaacatgccaaattaatcttaacccct 37035511  T
Q  236 tacggattcgcttattcctctctccaccacaccaacactcccaatgaacgaataaattaggcggaattaaatgaaacttatccaatcacccccattacac 335  Q
     ||| || |||||| ||||||| || |||| ||||||||||||    || ||||||||||||||||||| |  |||| | ||| | || |||||| | |     
T  37035510 gacgaatacgcttaatcctctccccgccactccaacactcccataagacaaataaattaggcggaattacaataaacctctcccacca-ccccataatat 37035412  T
Q  336 cttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgatgattcatccaccgtctcacaaaaggtacaa 415  Q
    |  |||| |||||| |||||||||||||||| ||||| |||||| |||| |||||||||||  ||||||| |||||||||    
T  37035411 cacgccacacccttccggcaacctcacaatggagaaaaagatgagttgacgattcatccac--tctcacacaaggtacaa 37035334  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 405
Target Start/End: Complemental strand, 24189517 - 24189326
Alignment:
Q  213 atgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaatgaacgaataaattaggcggaattaaatgaaac 312  Q
    |||||||||||||||||  || ||||| |||| |||||||  ||| ||||||| ||||||||||||| || |||| || |||||| |||||||  ||| |    
T  24189517 atgccaaataagtcttaggcccttacgaattctcttattctgctcgccaccactccaacactcccaaagagcgaacaagttaggcagaattaagagaatc 24189418  T
Q  313 ttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgatgattcatccaccgtctcaca 405  Q
     | |||   |  || ||| | ||||||||| |||||| | || || |||||||||||||| || |||||||| |||||||||||| |||||||    
T  24189417 ctctcc-ccctaccgcataataccttgccacacccttcccgctacatcacaatgaagaaagaggtgaattgacgattcatccaccctctcaca 24189326  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 24189660 - 24189605
Alignment:
Q  58 caccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgcca 113  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |||||    
T  24189660 caccattcatagtacatacacggaggcatagagattctatccaaagaccatcgcca 24189605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 49 - 278
Target Start/End: Complemental strand, 47820348 - 47820122
Alignment:
Q  49 ggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatcca 148  Q
    |||||||||||||| |||||  ||||||| |||| ||| |  ||| | ||||||||||||| |||||| | | |||| | ||| ||||| ||   |||||    
T  47820348 ggattccaacaccactcatagaacatacacggagacattgccattatctccaacgaccaccaccaagtaaccaccttaatatcctccacaat---atcca 47820252  T
Q  149 ccgccgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgctt 248  Q
    || || | ||||||||||| || ||||| |||||||| |||||||| |||||| ||||||||| ||||||||| | |||||| ||   ||| || | |||    
T  47820251 ccaccaaattccgattattgaagatcttgtcattcctagctttccataaaacccaaatcgtcgcatgccaaattaatcttaacccccgacgaatactctt 47820152  T
Q  249 attcctctctccaccacaccaacactccca 278  Q
     |||||||| ||||| ||||||||||||||    
T  47820151 cttcctctccccaccgcaccaacactccca 47820122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 28571679 - 28571641
Alignment:
Q  267 ccaacactcccaatgaacgaataaattaggcggaattaa 305  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  28571679 ccaacactcccaatgcacaaataaattaggcggaattaa 28571641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 180 - 397
Target Start/End: Original strand, 34774684 - 34774900
Alignment:
Q  180 attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa 279  Q
    |||||| |||||||| || ||| ||||||| | |||||||||||| ||||| || |||||  ||| |||||||||||| || || |||||||||||||||    
T  34774684 attcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactcccaa 34774783  T
Q  280 tgaacgaataaattaggcggaattaaatgaaacttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatga 379  Q
     | | ||| || ||||| ||||||||    | | | ||| | || |||||| ||||| ||||| || ||  | |||||||||||||| ||||||||||||    
T  34774784 aggatgaagaagttagggggaattaacatcatcctctcccacca-ccccataacaccctgccatactctaccagcaacctcacaatggagaaatagatga 34774882  T
Q  380 attgatgattcatccacc 397  Q
    ||||||||||| ||||||    
T  34774883 attgatgattcgtccacc 34774900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 279
Target Start/End: Complemental strand, 11780156 - 11779930
Alignment:
Q  53 tccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatccaccgc 152  Q
    ||||| |||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| | | |  |||| |  || ||||| ||||| |||||  |    
T  11780156 tccaaaaccattcatagtacatacacgggggcatagaaattctgtccaaagaccaacgccacgaccaaaccttaatctcctccacaatttcttccacatc 11780057  T
Q  153 cgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattc 252  Q
    ||  |||||   ||||||||   ||||||||||||| ||||||||  || | | ||| |  |||||||||||||  |  || |||| ||||| ||||| |    
T  11780056 cggattccggccattaaaaactctatcattccttgccttccacaacccccacaccgttgcgtgccaaataagtcgaagccccttacagattctcttatcc 11779957  T
Q  253 ctctctccaccacaccaacactcccaa 279  Q
    |||||| |||||| |||||||||||||    
T  11779956 ctctctacaccactccaacactcccaa 11779930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 397
Target Start/End: Original strand, 42748870 - 42749086
Alignment:
Q  180 attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa 279  Q
    |||||| |||||||| || ||| ||||||| | |||||||||||| ||||| ||  ||||  ||| |||||||||||| || || | |||||||||||||    
T  42748870 attcctagctttccataacacccaaatcgtggtatgccaaataagccttaatccgctacgagttctcttattcctctcccctccgctccaacactcccaa 42748969  T
Q  280 tgaacgaataaattaggcggaattaaatgaaacttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatga 379  Q
     ||| ||| || ||||| ||||||||    | | | ||| | || |||||| ||||| ||||| || ||  |||||||||||||||||||||| ||||||    
T  42748970 agaatgaagaagttagggggaattaacatcatcctctcccacca-ccccataacaccctgccacactctaccggcaacctcacaatgaagaaaaagatga 42749068  T
Q  380 attgatgattcatccacc 397  Q
    ||||| ||| | ||||||    
T  42749069 attgaggatccgtccacc 42749086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 47318630 - 47318661
Alignment:
Q  47 tcggattccaacaccattcataatacatacaa 78  Q
    ||||||||||||||||||||||||||||||||    
T  47318630 tcggattccaacaccattcataatacatacaa 47318661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 38553154 - 38553114
Alignment:
Q  169 aaaatcttatcattccttgctttccacaaaaccaaaatcgt 209  Q
    ||||||||||||||||| ||||||||||| ||| |||||||    
T  38553154 aaaatcttatcattcctagctttccacaacacccaaatcgt 38553114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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