View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15703_low_8 (Length: 398)
Name: NF15703_low_8
Description: NF15703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15703_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 32339368 - 32339596
Alignment:
| Q |
17 |
ttcactacaatagtcagacactaaaatcacgcacatattaatatttttcaaccattggtcttcaatgaattcaacattacaaacttatgataattttctt |
116 |
Q |
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| T |
32339368 |
ttcactacaatagtcagacactaaaatcacgtacatattaatatttttcaaccattggtcttcaatgaattcaacattac-aacttatgataattttctt |
32339466 |
T |
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| Q |
117 |
cataataggatcataaaacttataccaaacttatgata----atcaacaagcatggtttcctttttatatccacaattgtaatcttatctttaggcatca |
212 |
Q |
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| T |
32339467 |
cataataggatcataaaacttataccaaacttatgataatcgatcaacaaccatggtttcctttttacatccacaatagtaatcttatctttaggcatca |
32339566 |
T |
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| Q |
213 |
cattgtatgtgcgcaaacgatttacatatg |
242 |
Q |
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| T |
32339567 |
cattgtatgtgcgcaaacgatttacatatg |
32339596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 280 - 383
Target Start/End: Original strand, 32339642 - 32339745
Alignment:
| Q |
280 |
ttatattgcaaagtcgcacttgataaagtctttaggacaagtatcacccccaaaacgaccatgaaaactcttcatgtgacgataaatatctatctagaac |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
32339642 |
ttatattgcaaagtcgcacttgataaagtctttaggacaagtatcacccccaaaacgaccatgaaaactctttatgtgacgataactatctatctagaac |
32339741 |
T |
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| Q |
380 |
ataa |
383 |
Q |
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|||| |
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| T |
32339742 |
ataa |
32339745 |
T |
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