View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15703_low_9 (Length: 386)
Name: NF15703_low_9
Description: NF15703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15703_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 12 - 154
Target Start/End: Complemental strand, 4384819 - 4384677
Alignment:
| Q |
12 |
caaaggtagcaacatcttgtaatgtcattgctgttaagagaatggatcgggaaaaccggccacaaaaacttggtaaagttgataggatagtgtgatgaag |
111 |
Q |
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| T |
4384819 |
caaaggtagcaacatcttgtaatgtcattgctgttaagagaatggatcggtaaaaccggccacaaaaacttggtaaagttgataggatagtgtgatgaag |
4384720 |
T |
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| Q |
112 |
gaatggattgaatgttggtttatgagttaatgagcagggacaa |
154 |
Q |
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| T |
4384719 |
gaatggatagaatgttggtgcatgagttaatgagcagtgacaa |
4384677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 230 - 332
Target Start/End: Original strand, 4111190 - 4111291
Alignment:
| Q |
230 |
tatttaaagaaaaaccatgagattttcattggcaatatcttacaagtttcacatccactgataaagtctctgaattattcagaactgaactatcatattt |
329 |
Q |
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| T |
4111190 |
tatttaaagaaaaaccatgagattttcatttgcaatatcttacaagtttcacatccactgctaaagtctcagaatt-ttcagaactgaactatcatattt |
4111288 |
T |
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| Q |
330 |
gat |
332 |
Q |
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| T |
4111289 |
gat |
4111291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 4384661 - 4384598
Alignment:
| Q |
305 |
tattcagaactgaactatcatatttgatccactttcccttgtgctaaagaaaaacctgaaatat |
368 |
Q |
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| T |
4384661 |
tattcagaactgaactatcatatttgatccactttcccttgtgctaaagaaaaacctgaaatat |
4384598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 4110397 - 4110454
Alignment:
| Q |
19 |
agcaacatcttgtaatgtcattgctgttaagagaatggatcgggaaaaccggccacaa |
76 |
Q |
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| T |
4110397 |
agcaacatcttgtaatgtcattgctgttaagagaatggatcggtaaaaccggccacaa |
4110454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 4107224 - 4107305
Alignment:
| Q |
63 |
aaaaccggccacaaaaacttggtaaagttgataggatagtgtgatgaaggaatggattgaatgttggtttatgagttaatga |
144 |
Q |
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| T |
4107224 |
aaaacctgccacaaaaacttggtcaagttgattggatactgtgatgagggaatgcatagaatgttggtatatgagttcatga |
4107305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 4130405 - 4130489
Alignment:
| Q |
63 |
aaaaccggccacaaaaacttggtaaagttgataggatagtgtgatgaaggaatggattgaatgttggtttatgagttaatgagca |
147 |
Q |
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| T |
4130405 |
aaaacctgccacaaaaacttggtaaggttggttggattttgtgatgaaggattgcatagaatgttagtatatgagttcatgagca |
4130489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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