View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15704_high_2 (Length: 568)
Name: NF15704_high_2
Description: NF15704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15704_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 17 - 554
Target Start/End: Original strand, 327038 - 327576
Alignment:
| Q |
17 |
aatcccagatataataagcacgaattggatacctccttaatggtgtgttggaactttcgtattggtttc-tttagttttcttttgtcctagcattataat |
115 |
Q |
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| T |
327038 |
aatcccagatataataagcacgaattggatacctccttaatggtgtgttggaactttcgtattggtttcctttagttttcttttgtcctagcattataat |
327137 |
T |
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| Q |
116 |
ggattcgttaatgagtaattttcttttggctgttttcttgtgnnnnnnngtacagattataaggaaggtaatgaaaatggatgctgctgaacccttcaat |
215 |
Q |
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| T |
327138 |
ggattcgttaatgagtaattttcttttggctgttttcttgtgtttttttgtacagattataaggaaggtaatgaaaatggatgctgctgaacccttcaat |
327237 |
T |
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| Q |
216 |
gttcctgttaatccagaagctctaggaattcctgtaagtattaacattttcaagtaactttttcatggtattcgtttttaccagtaatttacatcacact |
315 |
Q |
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| T |
327238 |
gttcctgttaatccagaagctctaggaattcctgtaagtattaacattttcaagtaactttttcatggtattcttttttaccagtaatttacatcacact |
327337 |
T |
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| Q |
316 |
tactttatttttagttctctaaatgcagtagattttttcctaccccaacttctgtcctaaacctaatgttttcaaccttttctgtattttgttttcgtaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
327338 |
tactttatttttagttctctaaatgcagtagattttttcctaccccaacttctgtcctaaacctaatgttttcaaccttttctgtattttgttttcgtaa |
327437 |
T |
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| Q |
416 |
attggtttttcccggtcaatcatctttcttttgtttagtggcataactttgcttcacccaccatgtatgaaaagcaaaagttagaaataaatcaatttat |
515 |
Q |
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| T |
327438 |
attggtttttcccggtcaatcatctttcttttgtttagtggcataactttgcttcacccaccatgtatgaaaagcaaaagttagaaataaatcaatttat |
327537 |
T |
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| Q |
516 |
gctagattattctacaaagctacgtgacatttgttcatc |
554 |
Q |
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| T |
327538 |
gctagattattctacaaagctacgtgacatttgttcatc |
327576 |
T |
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