View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15704_high_4 (Length: 400)
Name: NF15704_high_4
Description: NF15704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15704_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Complemental strand, 40383340 - 40382964
Alignment:
| Q |
18 |
attattcggaatccgtctcggtgcagttctggttaccggaggaatcttggccaccatcttttaccgtcttgacgattcaccaaaaggtgttcaagagcgt |
117 |
Q |
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| T |
40383340 |
attattcggaatccgtctcggtgcagttctggttaccggaggaatcttggccaccatcttttaccgtcttgacgattcaccaaaaggtgttcaagagcgt |
40383241 |
T |
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| Q |
118 |
ttgggtttcttcgcctttgccatgtcaacaaccttctacacttgtgctgaagctatccccgttttccttcaagagcgttacattttcatgagagaaactg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383240 |
ttgggtttcttcgcctttgccatgtcaacaaccttctacacttgtgctgaagctatccccgttttccttcaagagcgttacattttcatgagagaaactg |
40383141 |
T |
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| Q |
218 |
cttacaacgcttaccgtcgttcttcctatgtccttgcacactccatcatctctctccctgcactcatcttcctctccttcgccttctccgtcaccacttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383140 |
cttacaacgcttaccgtcgttcttcctatgtccttgcacactccatcatctctctccctgcactcatcttcctctccttcgccttctccgtcaccacttt |
40383041 |
T |
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| Q |
318 |
ttggtctgttggacttgccggcgggacatctggtttcctcttttactttttcaccattttagcttccttctgtgctg |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40383040 |
ttggtctgttggacttgccggcgggacatctggtttcctcttttactttttcaccattttagcttccttctgggctg |
40382964 |
T |
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