View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15704_high_5 (Length: 381)
Name: NF15704_high_5
Description: NF15704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15704_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 22 - 369
Target Start/End: Original strand, 35047440 - 35047787
Alignment:
| Q |
22 |
agaatgttaattgaacgaatcaaagtaatagttgaatctgcaaccatatgttatagtgatgaagattttaaatacggtcatgtcgcaatctttgaaactg |
121 |
Q |
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| T |
35047440 |
agaatgttaattgaacgaatcaatgtaatagttgaaactgcaaccatatgttatagtgatgaagattttaaatacggtcatgtcgcaatctttgaaactg |
35047539 |
T |
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| Q |
122 |
caaagaaacagtcggtcgagcgacctcaattgcagatacataaataaaacttgatgcttcaccaaaatcagagtcgcagaacattttttaaaaccgtgac |
221 |
Q |
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| T |
35047540 |
caaagaaacagtcggtcgagcgacctcaattgcagatacataaataaaacttgatgcttcaccaaaatcagagtcacagaacattttttaaaaccgtgac |
35047639 |
T |
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| Q |
222 |
aaccatatgccatctttacattgtgcactcagaaacacgatacaagataattgttcttgagaatccaagtatgaatcttgactgaaagaatccttgatcg |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35047640 |
aaccatatgccatctttacattgtgcactcagaaacacgatacaagataattgttcttgagaatccaagtacgaatcttgactgaaagaatccttgatcg |
35047739 |
T |
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| Q |
322 |
gactttacttacctctcaggggaacttcagattgtcaatgttcatttc |
369 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35047740 |
gactttacttacctctcaggcgaacttcagattgtcaatgttcatttc |
35047787 |
T |
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