View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15704_low_10 (Length: 328)
Name: NF15704_low_10
Description: NF15704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15704_low_10 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: scaffold0294 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 40 - 313
Target Start/End: Complemental strand, 16379 - 16107
Alignment:
| Q |
40 |
tcaaacatatcctggtgtcggacacgcgtttgtgtcagacataagaaagcttaaatagtagagttttttggtaacaaaatttagttaagttaggttcaag |
139 |
Q |
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| T |
16379 |
tcaaacatatcctggtgtcagacacgcgtttgtgtctgacataagaaagcttaaatagtagagttttttggtaacaaaatttagttaagttaggttcaag |
16280 |
T |
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| Q |
140 |
agcttcatgcgagtcataccaaatatcaagattcaaagagccttgacacttatatttagagtgatataccatccgttaaagaggttctagcagcggcggc |
239 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16279 |
agcttcatgctagtcataccaaatatcaagattcaaa-agccttgacacttatatttagagtgatatatcatccgttaaagaggttctagcagcggcggc |
16181 |
T |
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| Q |
240 |
agtaggagttgaattcatacatttacacattgtttaggcaacatagcacatccactcatcagataagacgtgtc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16180 |
agtaggagttgaattcatacatttacacattgtttaggcaacgtagcacatccactcatcagataagacgtgtc |
16107 |
T |
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