View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15704_low_12 (Length: 314)
Name: NF15704_low_12
Description: NF15704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15704_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 35 - 286
Target Start/End: Complemental strand, 28156053 - 28155786
Alignment:
| Q |
35 |
agctagtaattaggtgtatgttgtagctaatttggtttttgttaacaataagctattgttaatttgtgtggaagatatcgaaattgtttaatgcatgtgg |
134 |
Q |
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| T |
28156053 |
agctagtaattaggtgtatgtttaagctaatttggtttttgttaacaataagctattgttaatttgtgtggaagatatcgaaattgtttaatgcatgtgg |
28155954 |
T |
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| Q |
135 |
ttgggtaggggttgatttgattcacctacttaactcttgagatctacaattggtagttgcttcttcacattttgattcattgagcagaacat-------- |
226 |
Q |
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| T |
28155953 |
ttgggtaggggttgatttgattcacctacttaactcttgagatctacaattggtagttgcttcttcacattttgattcattgagcagaacattattggca |
28155854 |
T |
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| Q |
227 |
--------tgtgtgaggcaatgagtccatgaaaatggaaacacttactgtggttaaagtggtttggtt |
286 |
Q |
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| T |
28155853 |
tggaagtgtatgtgaggcaatgagtccatgaaaatggagacacttactgtggttaaagtggtttggtt |
28155786 |
T |
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