View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15704_low_15 (Length: 277)

Name: NF15704_low_15
Description: NF15704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15704_low_15
NF15704_low_15
[»] chr2 (14 HSPs)
chr2 (1-123)||(1895402-1895524)
chr2 (8-123)||(17281959-17282075)
chr2 (2-123)||(1551607-1551728)
chr2 (10-123)||(3921584-3921697)
chr2 (7-121)||(17375271-17375385)
chr2 (200-271)||(1895254-1895325)
chr2 (204-265)||(1551809-1551870)
chr2 (206-263)||(17282158-17282215)
chr2 (50-123)||(34660278-34660351)
chr2 (204-263)||(3921444-3921503)
chr2 (204-261)||(17375153-17375210)
chr2 (204-263)||(4869507-4869566)
chr2 (50-123)||(4869637-4869710)
chr2 (210-262)||(14950835-14950887)
[»] chr6 (5 HSPs)
chr6 (1-123)||(20740570-20740692)
chr6 (1-123)||(21881459-21881581)
chr6 (200-265)||(20740453-20740518)
chr6 (204-263)||(21881318-21881377)
chr6 (210-262)||(32747716-32747768)
[»] chr4 (17 HSPs)
chr4 (8-126)||(47518466-47518584)
chr4 (1-123)||(53202258-53202380)
chr4 (32-123)||(34227057-34227148)
chr4 (204-263)||(53202118-53202177)
chr4 (22-123)||(23054262-23054363)
chr4 (204-263)||(47518662-47518721)
chr4 (200-268)||(23054441-23054508)
chr4 (204-265)||(34227204-34227265)
chr4 (32-101)||(6410005-6410074)
chr4 (53-118)||(12469342-12469407)
chr4 (210-262)||(45873102-45873154)
chr4 (216-259)||(12489216-12489259)
chr4 (53-101)||(12466698-12466746)
chr4 (210-262)||(14441115-14441167)
chr4 (210-260)||(12130516-12130566)
chr4 (210-262)||(38093215-38093267)
chr4 (210-262)||(55728692-55728744)
[»] chr5 (20 HSPs)
chr5 (2-126)||(18696922-18697046)
chr5 (13-100)||(41355543-41355630)
chr5 (8-123)||(7767020-7767135)
chr5 (200-263)||(38958379-38958442)
chr5 (204-259)||(41355722-41355777)
chr5 (1-123)||(27170097-27170219)
chr5 (52-123)||(38958230-38958301)
chr5 (57-123)||(7271826-7271892)
chr5 (50-123)||(6030388-6030461)
chr5 (204-263)||(7271708-7271767)
chr5 (204-258)||(27170275-27170329)
chr5 (210-262)||(26331217-26331269)
chr5 (204-263)||(26656630-26656688)
chr5 (204-263)||(26928217-26928275)
chr5 (204-259)||(40599985-40600040)
chr5 (224-262)||(42221388-42221426)
chr5 (204-259)||(7767203-7767255)
chr5 (210-262)||(24867205-24867257)
chr5 (50-100)||(26656780-26656830)
chr5 (50-100)||(26928367-26928417)
[»] chr8 (8 HSPs)
chr8 (1-126)||(10408814-10408939)
chr8 (3-123)||(5994622-5994742)
chr8 (10-123)||(6444027-6444140)
chr8 (210-262)||(5994485-5994537)
chr8 (204-263)||(10408702-10408761)
chr8 (210-262)||(15050162-15050214)
chr8 (215-259)||(3763045-3763089)
chr8 (210-262)||(25142902-25142954)
[»] chr1 (13 HSPs)
chr1 (10-126)||(34654967-34655083)
chr1 (204-263)||(34654830-34654889)
chr1 (1-96)||(34117991-34118086)
chr1 (12-122)||(26236671-26236781)
chr1 (10-100)||(39709015-39709105)
chr1 (50-123)||(615753-615826)
chr1 (200-263)||(39709180-39709243)
chr1 (205-265)||(34117896-34117955)
chr1 (10-100)||(11408002-11408092)
chr1 (204-257)||(615638-615691)
chr1 (210-259)||(11814695-11814744)
chr1 (210-258)||(2077483-2077531)
chr1 (210-262)||(14351174-14351226)
[»] chr7 (4 HSPs)
chr7 (204-263)||(11698554-11698613)
chr7 (204-263)||(3302427-3302486)
chr7 (7-123)||(3302567-3302683)
chr7 (210-262)||(31039000-31039052)
[»] chr3 (5 HSPs)
chr3 (50-123)||(18269763-18269836)
chr3 (204-263)||(43275830-43275890)
chr3 (216-268)||(18269919-18269971)
chr3 (210-259)||(31699221-31699270)
chr3 (49-95)||(43275999-43276045)
[»] scaffold0157 (1 HSPs)
scaffold0157 (216-259)||(31218-31261)
[»] scaffold0027 (1 HSPs)
scaffold0027 (210-262)||(2938-2989)


Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 1895524 - 1895402
Alignment:
Q  1 ggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1895524 ggtcatgatggtggtgatgagtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtacttcatggtggt 1895425  T
Q  101 tttcttggtggtactgattttgg 123  Q
    ||||||||||||| |||||||||    
T  1895424 tttcttggtggtattgattttgg 1895402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 17281959 - 17282075
Alignment:
Q  8 atggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttag-tttgtggtacttcatggtggttttctt 106  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  17281959 atggtggtgatggatcatatctaggtttgcttatgaacttatatggtttcgatggatctttggttgtgttggttttgtggtacttcatggtggttttctt 17282058  T
Q  107 ggtggtactgattttgg 123  Q
    |||||| ||||||||||    
T  17282059 ggtggtgctgattttgg 17282075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 1551607 - 1551728
Alignment:
Q  2 gtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 101  Q
    |||| |||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  1551607 gtcacgatggtggtgatggatcatgtataggttcgcttatgaacttatatagtttcgatggatctttggttgtgttggtttgtggtacttcgtggtggtt 1551706  T
Q  102 ttcttggtggtactgattttgg 123  Q
    |||||||| || ||||||||||    
T  1551707 ttcttggtagtgctgattttgg 1551728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 3921697 - 3921584
Alignment:
Q  10 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 109  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||||    
T  3921697 ggtggtgatggatcatatctaagttcgcttatgaacttatatggttttgatggatgtttggttgtgttggtttgtggtacttcacggtggttttcttggt 3921598  T
Q  110 ggtactgattttgg 123  Q
    ||| ||||||||||    
T  3921597 ggtgctgattttgg 3921584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 17375385 - 17375271
Alignment:
Q  7 gatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttctt 106  Q
    |||||||||||||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||||| |||||||   |||||| |    
T  17375385 gatggtggtgatggatcatatctaggttcgcttatgaactgttatggtttcgatgaatctttggttgtgttggtttgtggtgcttcatgacagttttcat 17375286  T
Q  107 ggtggtactgatttt 121  Q
    |||||| ||||||||    
T  17375285 ggtggtgctgatttt 17375271  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 200 - 271
Target Start/End: Complemental strand, 1895325 - 1895254
Alignment:
Q  200 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatgatg 271  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  1895325 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtgttcaatggtagttttggtgatggtgatg 1895254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 1551809 - 1551870
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 265  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1551809 tgttgcttttaggtgagggttaatggtgatttttgaggtggtcaatggtagttttggtgatg 1551870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 17282158 - 17282215
Alignment:
Q  206 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17282158 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtaggtttggtga 17282215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 34660351 - 34660278
Alignment:
Q  50 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 123  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  34660351 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 34660278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 3921503 - 3921444
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 263  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  3921503 tgttgcttttaggtgagggttaatggtgatttttgtggtggtaaatagtagttttggtga 3921444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 17375210 - 17375153
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggt 261  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  17375210 tgttgctttttggtgagggttaattgtggtttttgtggtggtcaatggtagttttggt 17375153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 4869566 - 4869507
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 263  Q
    ||||||||||  |||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  4869566 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtagtttttgtga 4869507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 4869710 - 4869637
Alignment:
Q  50 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 123  Q
    ||||||| ||||||||||||||||| || ||||| ||| |||||||| ||||||| || |||| ||||||||||    
T  4869710 atggttttgatggatctttggttgttttggtttgcggtgcttcatggcggttttcatgatggtgctgattttgg 4869637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 14950835 - 14950887
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 262  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  14950835 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 14950887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 20740692 - 20740570
Alignment:
Q  1 ggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 100  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  20740692 ggtcacgatggtggtgatggatcatatctaggttcggttatgaacttatatggtttcgatggatctttggttgtgttggtttatggtacttcatggtggt 20740593  T
Q  101 tttcttggtggtactgattttgg 123  Q
    |||||||||||| ||||||||||    
T  20740592 tttcttggtggtgctgattttgg 20740570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 21881581 - 21881459
Alignment:
Q  1 ggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 100  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||| |||| ||||||||| ||||||||  ||    
T  21881581 ggtcacgatggtggtgatggatcatatctaggttcgcttatgaactgctatggtttcgatgaatctttggttatgttggtttgtggtgcttcatggcagt 21881482  T
Q  101 tttcttggtggtactgattttgg 123  Q
    | || ||||||| ||||||||||    
T  21881481 tatcatggtggtgctgattttgg 21881459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 20740518 - 20740453
Alignment:
Q  200 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 265  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20740518 ctgatgttgcttttaggtgaaggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 20740453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 21881377 - 21881318
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 263  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  21881377 tgttgctttttggtgagggttaatcgtgatttttgtggtggtcaatgctagttttggtga 21881318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 32747716 - 32747768
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 262  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  32747716 tttttggtgaggtgtaatggtggtttttgtggtggttaatggtagttttggtg 32747768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 47518466 - 47518584
Alignment:
Q  8 atggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttg 107  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47518466 atggtggtgatgaatcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttcgtttgtggtacttcatggtggttttcttg 47518565  T
Q  108 gtggtactgattttggatc 126  Q
    ||| | |||||||||||||    
T  47518566 gtgttgctgattttggatc 47518584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 53202380 - 53202258
Alignment:
Q  1 ggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 100  Q
    ||||| |||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||    
T  53202380 ggtcacgatggtggtgatgaatcatatctagattcgcttatgaacttatatggtttcgatggatctttggttgtattggtttgtggtacttcatgatggt 53202281  T
Q  101 tttcttggtggtactgattttgg 123  Q
    ||||||||||||  |||||||||    
T  53202280 tttcttggtggtgttgattttgg 53202258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 32 - 123
Target Start/End: Original strand, 34227057 - 34227148
Alignment:
Q  32 gttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 123  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||||| ||||||||||    
T  34227057 gttcgcttatgaacttatatggtttcaatggatctttggttgtgttggtctgtggtacttcatggtggctttcttggtggtgctgattttgg 34227148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 53202177 - 53202118
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53202177 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 53202118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 23054262 - 23054363
Alignment:
Q  22 tcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgatttt 121  Q
    |||||||| ||||||||||||||||  ||||||||| ||||||||||||||||||| ||| ||||| ||| |||| ||||||| ||||||| ||||||||    
T  23054262 tcatatctcggttcgcttatgaactgttatggtttcaatggatctttggttgtgttggttcgtggtgctttatggcggttttcatggtggtgctgatttt 23054361  T
Q  122 gg 123  Q
    ||    
T  23054362 gg 23054363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 204 - 263
Target Start/End: Original strand, 47518662 - 47518721
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 263  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47518662 tgttgcttttaggtgagggttaatagtgatttttgtggtggtcaatggtagttttggtga 47518721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 23054441 - 23054508
Alignment:
Q  200 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 268  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||    
T  23054441 ctgatgttgcttttaggtgagggttaatggtg-gttttgtggtggtcaatggtagttttggtgacgatg 23054508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 34227204 - 34227265
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 265  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  34227204 tgttgcttttaggtgagggttaatggtggttttcgtgatggtcaatggtagttttagtgatg 34227265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 6410074 - 6410005
Alignment:
Q  32 gttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 101  Q
    |||||||||||| ||  ||||||||||||| ||||| ||||||||| ||||||||| |||||||||||||    
T  6410074 gttcgcttatgatctattatggtttcgatgaatcttgggttgtgttggtttgtggtgcttcatggtggtt 6410005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 12469342 - 12469407
Alignment:
Q  53 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgat 118  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||||  | ||||||| |||||    
T  12469342 gtttcgatggatccttggttgtgttggtttgtggtccttcatggtggttaccatggtggtgctgat 12469407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 45873154 - 45873102
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 262  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  45873154 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 45873102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 12489216 - 12489259
Alignment:
Q  216 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 259  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  12489216 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 12489259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 12466698 - 12466746
Alignment:
Q  53 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 101  Q
    ||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  12466698 gtttcgatggatccttggttatgttggtttgtggtccttcatggtggtt 12466746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 14441167 - 14441115
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 262  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  14441167 tttttggtgaggattaatggtggtttttgtgctggttaatggtagttttggtg 14441115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 12130566 - 12130516
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttgg 260  Q
    |||| ||||||| |||||| |  ||||||||||||||||||||||||||||    
T  12130566 tttttggtgaggattaatgatagtttttgtggtggtcaatggtagttttgg 12130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 38093267 - 38093215
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 262  Q
    |||| ||||||| || |||||| ||||||||||||| | ||||||||||||||    
T  38093267 tttttggtgaggatttatggtgttttttgtggtggttattggtagttttggtg 38093215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 55728744 - 55728692
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 262  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| || ||||||||    
T  55728744 tttttggtgaggattaatggtggtttttgtggtggttaatgataattttggtg 55728692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 18697046 - 18696922
Alignment:
Q  2 gtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 101  Q
    |||| |||||||||||||| |||||||||||||||||||||||||  ||||| |||| |||||||||||||||||| ||||||||| |||||||| | ||    
T  18697046 gtcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatgggttcggtggatctttggttgtgttggtttgtggtgcttcatggcgttt 18696947  T
Q  102 ttcttggtggtactgattttggatc 126  Q
    ||| ||||| | |||||||||||||    
T  18696946 ttcatggtgttgctgattttggatc 18696922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 41355543 - 41355630
Alignment:
Q  13 ggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 100  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41355543 ggtgatggatcatatctatgttcgctcatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtacttcatggtggt 41355630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 7767020 - 7767135
Alignment:
Q  8 atggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttg 107  Q
    ||||||||||||| |||||||||||||| |||||||| |  ||||||||||||||||||||||||||||| ||||||||| |||||||| || |||| ||    
T  7767020 atggtggtgatggatcatatctaggttcacttatgaattgttatggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcgggtttcatg 7767119  T
Q  108 gtggtactgattttgg 123  Q
    |||||  |||||||||    
T  7767120 gtggtgttgattttgg 7767135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 38958379 - 38958442
Alignment:
Q  200 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 263  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38958379 ctgacgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 38958442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 41355722 - 41355777
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41355722 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 41355777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 27170097 - 27170219
Alignment:
Q  1 ggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 100  Q
    ||||| ||||||||| |||| |||||| | | ||  |||| |||||  ||||||||||||||||||||||||||||| ||||||||| |||||||| |||    
T  27170097 ggtcacgatggtggtaatggatcatatttggctttacttacgaactgttatggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggt 27170196  T
Q  101 tttcttggtggtactgattttgg 123  Q
    |||| ||||||| || |||||||    
T  27170197 tttcatggtggtgctaattttgg 27170219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 38958230 - 38958301
Alignment:
Q  52 ggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 123  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||| ||||||||||    
T  38958230 ggtttcgatggatctttggttgtgttggtttgtgatacttcatggtggtttttttgatggtgctgattttgg 38958301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 7271892 - 7271826
Alignment:
Q  57 cgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 123  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  7271892 cgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 7271826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 6030388 - 6030461
Alignment:
Q  50 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 123  Q
    |||||||||||||||||||||||||||| ||||||||| |||| ||  ||||||| ||||||| ||||||||||    
T  6030388 atggtttcgatggatctttggttgtgttggtttgtggtgcttcctgacggttttcatggtggtgctgattttgg 6030461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 7271767 - 7271708
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 263  Q
    ||||||||||  |||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  7271767 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtacttttggtga 7271708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 27170275 - 27170329
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 258  Q
    |||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||    
T  27170275 tgttgctttttggtgaggattaatggtggtttttgtggtggttaatggtagtttt 27170329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 26331217 - 26331269
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 262  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  26331217 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 26331269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 26656688 - 26656630
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 263  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26656688 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26656630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 26928275 - 26928217
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 263  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26928275 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26928217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 40599985 - 40600040
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 259  Q
    ||||| |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  40599985 tgttgatttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 40600040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 42221426 - 42221388
Alignment:
Q  224 taatggtgatttttgtggtggtcaatggtagttttggtg 262  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  42221426 taatggtgatttttgtggtggttaatggtagttttggtg 42221388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 7767203 - 7767255
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 259  Q
    |||||||||||||||||||||   |||| |||||||||||||||||| ||||||||    
T  7767203 tgttgcttttaggtgagggtt---ggtggtttttgtggtggtcaatgatagttttg 7767255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 24867205 - 24867257
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 262  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  24867205 tttttggtgaggattaatggtggtttttgtgttggttaatggtagttttggtg 24867257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 26656830 - 26656780
Alignment:
Q  50 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 100  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26656830 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26656780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 26928417 - 26928367
Alignment:
Q  50 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 100  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26928417 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26928367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 10408939 - 10408814
Alignment:
Q  1 ggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 100  Q
    ||||| |||||||||||||| ||||||||||||||||||||||  |  ||||||||||||| ||||||||||||||| ||||||||| |||||||| |||    
T  10408939 ggtcacgatggtggtgatggatcatatctaggttcgcttatgatatgttatggtttcgatgaatctttggttgtgttggtttgtggtgcttcatggaggt 10408840  T
Q  101 tttcttggtggtactgattttggatc 126  Q
    |||  ||||||| || ||||||||||    
T  10408839 tttaatggtggtgctaattttggatc 10408814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 5994742 - 5994622
Alignment:
Q  3 tcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttt 102  Q
    |||||||||||||||||| |||||||| ||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||| |||||||| ||| |    
T  5994742 tcatgatggtggtgatggatcatatctgggttcgcttatgaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatggcggtat 5994643  T
Q  103 tcttggtggtactgattttgg 123  Q
    || ||||| |  |||||||||    
T  5994642 tcatggtgatgttgattttgg 5994622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 6444140 - 6444027
Alignment:
Q  10 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 109  Q
    ||||||||||| ||| || |  |||||| ||||| ||  ||||||||||| | ||||||| ||||||| |||||||||||||| ||||||||||| ||||    
T  6444140 ggtggtgatggatcagatatgagttcgcctatgagctgttatggtttcgaagaatctttgattgtgttggtttgtggtacttcgtggtggttttcatggt 6444041  T
Q  110 ggtactgattttgg 123  Q
    ||  ||||||||||    
T  6444040 ggggctgattttgg 6444027  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 5994537 - 5994485
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 262  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5994537 tttttggtgagggttaatggtgatttttgtggtggttaatggtagttttggtg 5994485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 10408761 - 10408702
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 263  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||    
T  10408761 tgttgcttttaggtgagagttaatggtggtttttgtggtggtcaatggttgttttagtga 10408702  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 15050162 - 15050214
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 262  Q
    |||| ||||||| |||||| || ||||||||||||| ||||||||||||||||    
T  15050162 tttttggtgaggattaatgatggtttttgtggtggttaatggtagttttggtg 15050214  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 3763045 - 3763089
Alignment:
Q  215 ggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 259  Q
    ||||||| |||||| || ||||||||||||| |||||||||||||    
T  3763045 ggtgaggattaatgatggtttttgtggtggttaatggtagttttg 3763089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 25142954 - 25142902
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 262  Q
    |||| |||||||  || ||||||||||||||||||| |||||||||| |||||    
T  25142954 ttttcggtgaggagtagtggtgatttttgtggtggttaatggtagttgtggtg 25142902  T

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Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 34655083 - 34654967
Alignment:
Q  10 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 109  Q
    ||||||||||| ||||||||||||||||||||||| |  |||||||| |||| ||||||| ||||||| ||||||||| |||||||| ||||||| ||||    
T  34655083 ggtggtgatggatcatatctaggttcgcttatgaaatgttatggttttgatgcatctttgattgtgttggtttgtggtgcttcatggcggttttcatggt 34654984  T
Q  110 ggtactgattttggatc 126  Q
    ||| |||||||||||||    
T  34654983 ggtgctgattttggatc 34654967  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 34654889 - 34654830
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34654889 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 34654830  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 34118086 - 34117991
Alignment:
Q  1 ggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 96  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||  |||||||||  ||||||||||||||||||  |||||||| | ||||||    
T  34118086 ggtcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatggtttcagtggatctttggttgtgttgatttgtggtgcctcatgg 34117991  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 26236671 - 26236781
Alignment:
Q  12 tggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtgg 111  Q
    ||||||||| ||| |||| ||||| ||||||| ||  ||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||| || |||    
T  26236671 tggtgatggatcagatctgggttcacttatgacctgttatgggttcgatggatctttggttgcgttggtttgtggtgcttcatggtggttttcatgatgg 26236770  T
Q  112 tactgattttg 122  Q
    | |||||||||    
T  26236771 tgctgattttg 26236781  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 39709015 - 39709105
Alignment:
Q  10 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 100  Q
    ||||||||||| || ||||| |||||||||| |||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  39709015 ggtggtgatggatcgtatctgggttcgcttaggaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatggtggt 39709105  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 615826 - 615753
Alignment:
Q  50 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 123  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||  ||||||| ||||||| |||| |||||    
T  615826 atggttttgatggatctttggttgtgttagtttgtggtgcttcatgacggttttcatggtggtgctgaatttgg 615753  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 39709180 - 39709243
Alignment:
Q  200 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 263  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  39709180 ctgatatttctttttggtgagggttaatggtgatttttgtggtggttaatggtagttttcgtga 39709243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 34117955 - 34117896
Alignment:
Q  205 gttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 265  Q
    ||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  34117955 gttgctttt-ggtgagggttaatggtggtttttgtagcggtcaatggtagttttggtgatg 34117896  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 11408002 - 11408092
Alignment:
Q  10 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 100  Q
    ||||||||||| ||| || | |||| ||||||||  |  |||||||||||   ||||||||||||||| ||||||||| ||||||||||||    
T  11408002 ggtggtgatggatcagatatgggttagcttatgatatgttatggtttcgacaaatctttggttgtgttggtttgtggtgcttcatggtggt 11408092  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 615691 - 615638
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttt 257  Q
    ||||||||||  |||| |||||||||||  |||||||| |||||||||||||||    
T  615691 tgttgctttttagtgatggttaatggtgccttttgtggcggtcaatggtagttt 615638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 11814744 - 11814695
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 259  Q
    |||| ||||||| ||||||||| |||||||| |||| |||||||||||||    
T  11814744 tttttggtgaggattaatggtggtttttgtgatggttaatggtagttttg 11814695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 2077483 - 2077531
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 258  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| |||||||    
T  2077483 tttttggtgaggattaatggtggtttttgtggtggttaatgatagtttt 2077531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 14351174 - 14351226
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 262  Q
    |||| ||||||  ||||||||| ||||||||||||| | ||||||||||||||    
T  14351174 tttttggtgagaattaatggtggtttttgtggtggttagtggtagttttggtg 14351226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 204 - 263
Target Start/End: Original strand, 11698554 - 11698613
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11698554 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 11698613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 3302486 - 3302427
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 263  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||    
T  3302486 tgttgctttttggtgagtgttaatggtggtttttgtggtggtcaatggtagttttggtga 3302427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 3302683 - 3302567
Alignment:
Q  7 gatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttctt 106  Q
    ||||||||||||   |||||||||| ||||||||| ||||  ||| |||||||||||||||||||||| || || |||||| |||||||   |||||| |    
T  3302683 gatggtggtgatacatcatatctagattcgcttattaactgttatagtttcgatggatctttggttgtattggtatgtggtgcttcatgacagttttcat 3302584  T
Q  107 ggtggtactgattttgg 123  Q
    ||||||  |||||||||    
T  3302583 ggtggtgttgattttgg 3302567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 31039052 - 31039000
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 262  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  31039052 ttttcggtgaggagtaatggtggtttttgtggtggttaatggtagttttggtg 31039000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 18269763 - 18269836
Alignment:
Q  50 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 123  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||  |||||||||    
T  18269763 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggtggttttcatggtggtgttgattttgg 18269836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 43275890 - 43275830
Alignment:
Q  204 tgttgcttttaggtgagggttaatggtgattttt-gtggtggtcaatggtagttttggtga 263  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  43275890 tgttgctttttggtgagggttaatggtggttttttgtggtggtcaatggtagttttggtga 43275830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 18269919 - 18269971
Alignment:
Q  216 gtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 268  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  18269919 gtgatggttaatggtggtttttgtggtggtcaatggaagttttggtgacgatg 18269971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 31699270 - 31699221
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 259  Q
    |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  31699270 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 31699221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 43276045 - 43275999
Alignment:
Q  49 tatggtttcgatggatctttggttgtgttagtttgtggtacttcatg 95  Q
    |||| |||||||| ||||||||||||||| ||||||||| |||||||    
T  43276045 tatgatttcgatgaatctttggttgtgttggtttgtggtgcttcatg 43275999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 31261 - 31218
Alignment:
Q  216 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 259  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  31261 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 31218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 2989 - 2938
Alignment:
Q  210 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 262  Q
    |||| |||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  2989 tttttggtgaggagtaatggtgatttt-gtggtggttaatggtagttttggtg 2938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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