View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15704_low_16 (Length: 259)
Name: NF15704_low_16
Description: NF15704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15704_low_16 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 255
Target Start/End: Original strand, 37882378 - 37882609
Alignment:
| Q |
21 |
cacggaccgtactcgagctttggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaacaccgaaaagaccaagtttcccttgtttc |
120 |
Q |
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| T |
37882378 |
cacggaccgtactcgagcttcggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaacaccgaaaaaaccaagtttcccttgtttc |
37882477 |
T |
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| Q |
121 |
caactcactatctcttaatatccttaacttgttaaaattttctctaatctatgaaatnnnnnnnngatgattatcaataaacgttttatatgaagactgt |
220 |
Q |
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| T |
37882478 |
caactcactatctcttaatatccttaacttgttaaaattttctctaatctatgaaat---aaaaagatgattatcaataaacgttttatatgaagactgt |
37882574 |
T |
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| Q |
221 |
gaaggttgttgcaatacaacacaggttctgctcgt |
255 |
Q |
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| T |
37882575 |
gaaggttgttgcaatacaacacagttgctgctcgt |
37882609 |
T |
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Target: scaffold0082 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 14837 - 14752
Alignment:
| Q |
21 |
cacggaccgtactcgagctttggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaacaccgaaaagaccaa |
106 |
Q |
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| T |
14837 |
cacggaccgtactcgagcttcggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaacaccgaaaaaaccaa |
14752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 17604590 - 17604524
Alignment:
| Q |
25 |
gaccgtactcgagctttggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaa |
91 |
Q |
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|||||||||||||||| |||||||||||||| |||||| ||||| ||||| |||||||||||||| |
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| T |
17604590 |
gaccgtactcgagcttcagatcaatgtccccataagcaaagagtatgcccgattgtttttaagagaa |
17604524 |
T |
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