View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15704_low_17 (Length: 258)
Name: NF15704_low_17
Description: NF15704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15704_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37521358 - 37521590
Alignment:
| Q |
1 |
tagcatttataaatactcaattaggac---agtgttttcagtaaaatatacagaactatgaaaacttacgaatatattttatacatgagaaggagagcat |
97 |
Q |
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| T |
37521358 |
tagcatttatcaatactcaattaggactttagtgttttcagtaaaatatacagaactatgaaaacttacgaatatattttatacaggagaaggagagcat |
37521457 |
T |
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| Q |
98 |
gatgaatatgttgttcgattgttgaaacaagcccagagttgcttggaaacttcgttcaaaggaactacccattttttcaaccatcttctgtttggataga |
197 |
Q |
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| T |
37521458 |
gatgaatatgttgttcgattgttgaaacaagcccagagttgcttggaaacttcgttcaaaggaactacccattttttcaaccatcttctgtttggataga |
37521557 |
T |
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| Q |
198 |
aagatggatcatattgaggagatgaagaaaact |
230 |
Q |
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| T |
37521558 |
aagatggatcatattgaggagatgaagaaaact |
37521590 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 26374732 - 26374668
Alignment:
| Q |
85 |
agaaggagagcatgatgaatatgttgttcgattgttgaaa-caagcccagagttgcttggaaact |
148 |
Q |
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| T |
26374732 |
agaaggagagcatgataaatatgttgctcgattgttgaaattgagcccggagttgcttcgaaact |
26374668 |
T |
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