View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15704_low_18 (Length: 234)
Name: NF15704_low_18
Description: NF15704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15704_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 31069427 - 31069534
Alignment:
| Q |
113 |
gtacttgaagaactcacaactccaacattgactttgtatggactctgatcagcaagaaaagcttccgcaactccaaggattggatccttaggagctggct |
212 |
Q |
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| T |
31069427 |
gtacttgaagaactcacaactccaacattgactttgtatggactctgatcagcgagaaaagcttccgcaactccaaggattggatccttaggagctggct |
31069526 |
T |
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| Q |
213 |
cgatattc |
220 |
Q |
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|||||||| |
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| T |
31069527 |
cgatattc |
31069534 |
T |
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Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 31078051 - 31078144
Alignment:
| Q |
123 |
aactcacaactccaacattgactttgtatggactctgatcagcaagaaaagcttccgcaactccaaggattggatccttaggagctggctcgat |
216 |
Q |
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|||| |||||||||||||| ||||||| |||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||| ||||| |
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| T |
31078051 |
aacttacaactccaacattaactttgtttggactctgatccgcaagaaaagcttcggtaactccgaggattggatccttaggagctggttcgat |
31078144 |
T |
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