View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15704_low_3 (Length: 478)
Name: NF15704_low_3
Description: NF15704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15704_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 5 - 454
Target Start/End: Complemental strand, 989348 - 988899
Alignment:
| Q |
5 |
cagcataccctctaatcagagtattacaagtataaagtgaacacttggttccttcatcttccttgaaagcattgagagcatagtttaagctttcatgggt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
989348 |
cagcataccctctaatcagagtattacaagtataaagtgaacacttggttccttcatcttccttgaaagcattgagagcatagtttaagctttcatgggt |
989249 |
T |
|
| Q |
105 |
acccatttggacacaagcagcaatgagcttgttgatgttaaaaacacctttctttaacatgttacagtgtaattgtttgagctcaatgagggttttgcag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
989248 |
acccatttggacacaagcagcaatgagcttgttgatgttaaaaacacctttctttaacatgttacagtgtaattgtttgagctcaatgagggttttgcag |
989149 |
T |
|
| Q |
205 |
gtttgaagcgatgaatttttgggcttttgtgttgttgtgggaagtaagagaggagatgaagattgatgaagtgttgtagtagtagtagccattggtatta |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
989148 |
gtttgaagcgatgaatttttgggcttttgtgttgttgtgggaagtaagagaggagatgaagattgatgaagggttgtagtagtagtagccattggtattg |
989049 |
T |
|
| Q |
305 |
gtagaagagacaacacaatcatatctagttcaaacaaaagaaaaacatatgtgtctgtctgaaatttgaaaccatttctataagtatggtgttctgttgt |
404 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
989048 |
gtggaagagacaacacaatcatatctagttcaaacaaaagaaaaacatatgtgtctgtctgaaatttgaaaccatttctataagtatggtgttctgttgt |
988949 |
T |
|
| Q |
405 |
ttgttaatgtttcattatctttgtttcaataacagataaacatgcattta |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
988948 |
ttgttaatgtttcattatctttgtttcaataacagataaacatgcattta |
988899 |
T |
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