View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15704_low_4 (Length: 462)
Name: NF15704_low_4
Description: NF15704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15704_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 53492346 - 53491916
Alignment:
| Q |
18 |
catccccccatgttatatcaaagtcttgataaaaattgccagcagaggcaattgcaacctcagaaataaaaatgactaggaatgtgagaaattttgaaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |
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| T |
53492346 |
catccccccatgttatatcaaagtcttgataaaaattgccagcagaggcaattgcaaccgtagaaataaaaatgaccaggaatgtgacaaattttgaaaa |
53492247 |
T |
|
| Q |
118 |
agccattgaatatttataagctgattcaaatactaaaagaatggaatggatttattttttgttgatgtgatattgcaaagatggaatgtcatgtatttat |
217 |
Q |
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| T |
53492246 |
agccattgaatatttataagctgattcaaatactaaaagaatggaatggatttattttttgttgatgtgatattgcaaagatggaatgtcatgtatttat |
53492147 |
T |
|
| Q |
218 |
agggtgcataagagaggaaagtaacaaaaaggttcacttgagattgaagatacgtatagtatagggttgagaagttggtcttgaattaggagcgagtggg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
53492146 |
agggtgcataagagaggaaagtaacaaaaaggttcacttgagattgaagatacgtatagtatagggttgagaagttggtcatgaattaggagtgagtggg |
53492047 |
T |
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| Q |
318 |
taaagtaaagacatggttggtttggtataatgcccacccaaatgatatcatcacacacgtttgtgcatgaaatgctgtatacccattagccagtcacaca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492046 |
taaagtaaagacatggttggtttggtataatgcccacccaaatgatatcatcacacacgtttgtgcatgaaatgctgtatacccattagccagtcacaca |
53491947 |
T |
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| Q |
418 |
tttaatgtgtaaaacgttcaccgcttttgat |
448 |
Q |
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| T |
53491946 |
tttaatgtgtaaaacgttcaccgcctttgat |
53491916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 311 - 448
Target Start/End: Complemental strand, 37188031 - 37187888
Alignment:
| Q |
311 |
gagtgggtaaagtaaagacatggttgg-tttggtata-----atgcccacccaaatgatatcatcacacacgtttgtgcatgaaatgctgtatacccatt |
404 |
Q |
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| T |
37188031 |
gagtgggtaaagtaaaggcatggttggatttggtataggtggatgcccacccaaatgatatcatcacacgcggttgtgcatgaaatgctgtatacccaat |
37187932 |
T |
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| Q |
405 |
agccagtcacacatttaatgtgtaaaacgttcaccgcttttgat |
448 |
Q |
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| T |
37187931 |
agccagccatacaattaatgtgcaaaacattcaccgcctttgat |
37187888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 37188308 - 37188224
Alignment:
| Q |
18 |
catccccccatgttatatcaaagtcttgataaaaattgccagcagaggcaattgcaacctcagaaataaaaatgactaggaatgt |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |
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| T |
37188308 |
catccccccatgttatatcaaagtcttgataaaaattgccagcagaggcaattgcaaccgtagagattaaaatgactaggaatgt |
37188224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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