View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15704_low_8 (Length: 344)
Name: NF15704_low_8
Description: NF15704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15704_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 40222318 - 40222623
Alignment:
| Q |
21 |
gcgcatattgaaccacatatatgacatcaacgtgtaatttattttatactatcaatcaatcataatcgtcagatcatttgacttttaacgaaccttattt |
120 |
Q |
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| T |
40222318 |
gcgcatattgaaccacatatatgacatcaacgtgtaatttcttttatactatcaatcaatcataatcgtcagatcatttgacttttaacgaaccttattt |
40222417 |
T |
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| Q |
121 |
ccaaggtagcccatgatgccggtaccaacgcgagacacttttaaattgccaacgtggttgcgataatcggcgcgtacccacacgcacaagaagataccaa |
220 |
Q |
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| T |
40222418 |
ccaaggtagcccatgatgccggtaccaacgcgagacacttttaaattgccaacgtggttgcgataatcggcgcgtacccacacgcacaagaagataccga |
40222517 |
T |
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| Q |
221 |
ccatttgcttgcttgctactagactaaagcgttgcttttgatttgggatttcattgtttgaggtgtttagagcttgatgaataagggctagccactttgc |
320 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222518 |
ccatttgcttgcttgctactaggctaaagcgtttcttttgatttgggatttcattgtttgaggtgtttagagcttgatgaataagggctagccactttgc |
40222617 |
T |
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| Q |
321 |
tgcggg |
326 |
Q |
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|||||| |
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| T |
40222618 |
tgcggg |
40222623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 39338417 - 39338380
Alignment:
| Q |
61 |
attttatactatcaatcaatcataatcgtcagatcatt |
98 |
Q |
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| T |
39338417 |
attttatactatcaatcaattataatcgtcaaatcatt |
39338380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 4076111 - 4076069
Alignment:
| Q |
56 |
aatttattttatactatcaatcaatcataatcgtcagatcatt |
98 |
Q |
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||||| ||||| |||||||||||||||||||||| |||||||| |
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| T |
4076111 |
aattttttttacactatcaatcaatcataatcgttagatcatt |
4076069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 36886013 - 36886051
Alignment:
| Q |
60 |
tattttatactatcaatcaatcataatcgtcagatcatt |
98 |
Q |
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||||||| ||||||||||||||||||||||||| ||||| |
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| T |
36886013 |
tattttacactatcaatcaatcataatcgtcaggtcatt |
36886051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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