View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15704_low_9 (Length: 329)

Name: NF15704_low_9
Description: NF15704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15704_low_9
NF15704_low_9
[»] chr5 (4 HSPs)
chr5 (13-194)||(22808059-22808240)
chr5 (194-313)||(22809381-22809499)
chr5 (145-197)||(22808106-22808158)
chr5 (210-272)||(33231855-33231917)
[»] chr8 (7 HSPs)
chr8 (13-197)||(19646273-19646457)
chr8 (194-313)||(19647574-19647693)
chr8 (62-113)||(19646407-19646458)
chr8 (210-272)||(192784-192846)
chr8 (210-272)||(720388-720450)
chr8 (210-272)||(881495-881557)
chr8 (142-195)||(19646462-19646515)
[»] chr4 (23 HSPs)
chr4 (13-197)||(22696839-22697023)
chr4 (43-197)||(28949082-28949236)
chr4 (43-197)||(22714825-22714979)
chr4 (43-197)||(22990246-22990400)
chr4 (194-313)||(22698114-22698233)
chr4 (194-313)||(22982297-22982416)
chr4 (194-313)||(22995884-22996003)
chr4 (38-197)||(46956548-46956710)
chr4 (62-113)||(46956660-46956711)
chr4 (62-113)||(22714824-22714875)
chr4 (62-113)||(22990350-22990401)
chr4 (62-113)||(28949081-28949132)
chr4 (210-272)||(24036838-24036900)
chr4 (142-195)||(22990405-22990458)
chr4 (142-195)||(46956715-46956768)
chr4 (62-113)||(22696973-22697024)
chr4 (142-195)||(22697028-22697081)
chr4 (142-195)||(22714767-22714820)
chr4 (142-195)||(28949024-28949077)
chr4 (38-78)||(22714978-22715018)
chr4 (38-78)||(22990207-22990247)
chr4 (62-102)||(22990410-22990450)
chr4 (62-102)||(46956720-46956760)
[»] chr1 (5 HSPs)
chr1 (13-197)||(4344186-4344369)
chr1 (194-313)||(4345370-4345489)
chr1 (62-113)||(4344319-4344370)
chr1 (210-272)||(46406886-46406948)
chr1 (142-195)||(4344374-4344427)
[»] chr7 (4 HSPs)
chr7 (38-197)||(20087600-20087759)
chr7 (62-113)||(20087709-20087760)
chr7 (142-195)||(20087764-20087817)
chr7 (62-102)||(20087769-20087809)
[»] chr2 (6 HSPs)
chr2 (51-197)||(23362505-23362651)
chr2 (194-313)||(23361559-23361678)
chr2 (13-55)||(23376313-23376355)
chr2 (62-113)||(23362504-23362555)
chr2 (210-272)||(14036025-14036087)
chr2 (210-272)||(13895398-13895460)
[»] scaffold0009 (4 HSPs)
scaffold0009 (43-189)||(200716-200862)
scaffold0009 (147-197)||(200793-200843)
scaffold0009 (38-78)||(200861-200901)
scaffold0009 (142-195)||(200640-200693)
[»] chr3 (2 HSPs)
chr3 (194-313)||(7011035-7011154)
chr3 (210-272)||(51126007-51126069)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 22808059 - 22808240
Alignment:
Q  13 gaacctgtgtgactaggatgtgatgggaattaagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtt 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22808059 gaacctatgtgactaggatgtgatgggaattaagctaggaagtactataaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtt 22808158  T
Q  113 tagtctttaatgttgtaatgttctgttgtctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttat 194  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22808159 tagtctttaatgttgtaatgttccgttatctttaaattaagaagtaatctaggaagtactagtaactatgaagtactattat 22808240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 194 - 313
Target Start/End: Original strand, 22809381 - 22809499
Alignment:
Q  194 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 293  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22809381 tgttggaca-ggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgttagttgcttgcttg 22809479  T
Q  294 agtttgtccatcgaatatat 313  Q
    ||||||||||| ||||||||    
T  22809480 agtttgtccatagaatatat 22809499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 22808106 - 22808158
Alignment:
Q  145 taaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 197  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  22808106 taaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtt 22808158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 33231855 - 33231917
Alignment:
Q  210 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 272  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||  |||||||    
T  33231855 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgttagtagatattttcat 33231917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 19646273 - 19646457
Alignment:
Q  13 gaacctgtgtgactaggatgtgatgggaattaagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtt 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||    
T  19646273 gaacctgtgtgactaggatgtaatgggaattaagctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactcttatgtt 19646372  T
Q  113 tagtctttaatgttgtaatgttctgttgtctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 197  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||| |||||||||    
T  19646373 taatctttaatgttgtaatgttctgttgtctttaaattaagaagtaatctaggaagtaccggtaactttgaagtattgttatgtt 19646457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 194 - 313
Target Start/End: Original strand, 19647574 - 19647693
Alignment:
Q  194 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 293  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19647574 tgttggacatggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgttagttgcttgcttg 19647673  T
Q  294 agtttgtccatcgaatatat 313  Q
    ||||||||||||||||||||    
T  19647674 agtttgtccatcgaatatat 19647693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 19646407 - 19646458
Alignment:
Q  62 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 113  Q
    ||||||||||||||||| |||||||  |||||| ||||||||||||||||||    
T  19646407 aattaagaagtaatctaggaagtaccggtaactttgaagtattgttatgttt 19646458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 192784 - 192846
Alignment:
Q  210 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 272  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||| |||||||    
T  192784 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcat 192846  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 720388 - 720450
Alignment:
Q  210 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 272  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||| |||||||    
T  720388 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcat 720450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 881495 - 881557
Alignment:
Q  210 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 272  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||| |||||||    
T  881495 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcat 881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 19646462 - 19646515
Alignment:
Q  142 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 195  Q
    |||| ||||| ||||||||||| |||||  |||||||||||||||||| |||||    
T  19646462 ctttcaattaggaagtaatctaagaagtggtagtaactatgaagtactcttatg 19646515  T

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Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 22696839 - 22697023
Alignment:
Q  13 gaacctgtgtgactaggatgtgatgggaattaagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtt 112  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | || ||||    
T  22696839 gaacctgtgtgactaggatgtaatgggaattaacctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactattttgtt 22696938  T
Q  113 tagtctttaatgttgtaatgttctgttgtctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 197  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||    
T  22696939 tagtctttaatgttgtaatgctctgttgtctttaaattaagaagtaatctaggaagtaccggtaactttgaagtactgttatgtt 22697023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 28949236 - 28949082
Alignment:
Q  43 taagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttctgttgtc 142  Q
    |||||||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  28949236 taagctaggatgtactatgaattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc 28949137  T
Q  143 tttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 197  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  28949136 tttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgtt 28949082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 22714979 - 22714825
Alignment:
Q  43 taagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttctgttgtc 142  Q
    |||| ||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  22714979 taagataggatgtactatgaattaagaagtaatctaggaagtattagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc 22714880  T
Q  143 tttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 197  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  22714879 tttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgtt 22714825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 43 - 197
Target Start/End: Original strand, 22990246 - 22990400
Alignment:
Q  43 taagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttctgttgtc 142  Q
    |||| ||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  22990246 taagataggatgtactatgaattaagaagtaatctaggaagtattagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc 22990345  T
Q  143 tttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 197  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  22990346 tttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgtt 22990400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 194 - 313
Target Start/End: Original strand, 22698114 - 22698233
Alignment:
Q  194 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 293  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22698114 tgttggacatggagtgggtaatagaatgattcaagaaaggttccaacacttaggagaaactgtgagtagacgttttcatgatgtgttagttgcttgcttg 22698213  T
Q  294 agtttgtccatcgaatatat 313  Q
    ||||||||||||||||||||    
T  22698214 agtttgtccatcgaatatat 22698233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 194 - 313
Target Start/End: Complemental strand, 22982416 - 22982297
Alignment:
Q  194 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 293  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22982416 tgttggacatggagtgggtaatagaatgattcaagaaaggttccaacacttaggagaaactgtgagtagacgttttcatgatgtgttagttgcttgcttg 22982317  T
Q  294 agtttgtccatcgaatatat 313  Q
    ||||||||||||||||||||    
T  22982316 agtttgtccatcgaatatat 22982297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 194 - 313
Target Start/End: Complemental strand, 22996003 - 22995884
Alignment:
Q  194 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 293  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22996003 tgttggacatggagtgggtaatagaatgattcaagaaaggttccaacacttaggagaaactgtgagtagacgttttcatgatgtgttagttgcttgcttg 22995904  T
Q  294 agtttgtccatcgaatatat 313  Q
    ||||||||||||||||||||    
T  22995903 agtttgtccatcgaatatat 22995884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 46956548 - 46956710
Alignment:
Q  38 ggaattaagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtt---tagtctttaatgttgtaatgtt 134  Q
    |||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||| ||   ||||||||||||||||||||||    
T  46956548 ggaagtaagctagaaagtactatgaattaagaagtaatctaggaagtactagtaactatgaagcactgttatattatttagtctttaatgttgtaatgtt 46956647  T
Q  135 ctgttgtctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 197  Q
    |  || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46956648 ccattatctttaaattaagaagtaatctaggaagtactagtaactatcaagtactgttatgtt 46956710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 46956660 - 46956711
Alignment:
Q  62 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 113  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  46956660 aattaagaagtaatctaggaagtactagtaactatcaagtactgttatgttt 46956711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 22714875 - 22714824
Alignment:
Q  62 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 113  Q
    ||||||||||||||||| |||||||  |||||||||||||| ||||||||||    
T  22714875 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttt 22714824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 22990350 - 22990401
Alignment:
Q  62 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 113  Q
    ||||||||||||||||| |||||||  |||||||||||||| ||||||||||    
T  22990350 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttt 22990401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 28949132 - 28949081
Alignment:
Q  62 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 113  Q
    ||||||||||||||||| |||||||  |||||||||||||| ||||||||||    
T  28949132 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttt 28949081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 24036900 - 24036838
Alignment:
Q  210 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 272  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||| |||||||    
T  24036900 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcat 24036838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 22990405 - 22990458
Alignment:
Q  142 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 195  Q
    |||| ||||| ||||||||||| ||||| ||||||||||||||||||| |||||    
T  22990405 ctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactcttatg 22990458  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 46956715 - 46956768
Alignment:
Q  142 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 195  Q
    |||| ||||| ||||||||||| ||||| ||||||||||||||||||| |||||    
T  46956715 cttttaattaggaagtaatctaagaagtgctagtaactatgaagtactattatg 46956768  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 22696973 - 22697024
Alignment:
Q  62 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 113  Q
    ||||||||||||||||| |||||||  |||||| ||||||| ||||||||||    
T  22696973 aattaagaagtaatctaggaagtaccggtaactttgaagtactgttatgttt 22697024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 22697028 - 22697081
Alignment:
Q  142 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 195  Q
    |||| ||||| ||||||||||| |||||  |||||||||||||||||| |||||    
T  22697028 ctttcaattaggaagtaatctaagaagtggtagtaactatgaagtactcttatg 22697081  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 22714820 - 22714767
Alignment:
Q  142 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 195  Q
    |||| ||||| |||||||||||  |||| ||||||||||||||||||| |||||    
T  22714820 ctttcaattaggaagtaatctaaaaagtgctagtaactatgaagtactcttatg 22714767  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 28949077 - 28949024
Alignment:
Q  142 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 195  Q
    |||| ||||| |||||||||||  |||| ||||||||||||||||||| |||||    
T  28949077 ctttcaattaggaagtaatctaaaaagtgctagtaactatgaagtactcttatg 28949024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 22715018 - 22714978
Alignment:
Q  38 ggaattaagctaggaagtattatgaattaagaagtaatcta 78  Q
    |||| |||| ||||||||| |||||||||||||||||||||    
T  22715018 ggaagtaagttaggaagtactatgaattaagaagtaatcta 22714978  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 22990207 - 22990247
Alignment:
Q  38 ggaattaagctaggaagtattatgaattaagaagtaatcta 78  Q
    |||| |||| ||||||||| |||||||||||||||||||||    
T  22990207 ggaagtaagttaggaagtactatgaattaagaagtaatcta 22990247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 22990410 - 22990450
Alignment:
Q  62 aattaagaagtaatctatgaagtactagtaactatgaagta 102  Q
    ||||| ||||||||||| ||||| |||||||||||||||||    
T  22990410 aattaggaagtaatctaagaagtgctagtaactatgaagta 22990450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 46956720 - 46956760
Alignment:
Q  62 aattaagaagtaatctatgaagtactagtaactatgaagta 102  Q
    ||||| ||||||||||| ||||| |||||||||||||||||    
T  46956720 aattaggaagtaatctaagaagtgctagtaactatgaagta 46956760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 7e-74; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 4344186 - 4344369
Alignment:
Q  13 gaacctgtgtgactaggatgtgatgggaattaagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtt 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  4344186 gaacctgtgtgactaggatgtaatgggaattaagctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactgttatgtt 4344285  T
Q  113 tagtctttaatgttgtaatgttctgttgtctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 197  Q
    |||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  4344286 tagtctttaatgtt-taatgtttcgttgtctttaaattaagaagtaatctaggaagtaccagtaactttgaagtattgttatgtt 4344369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 194 - 313
Target Start/End: Original strand, 4345370 - 4345489
Alignment:
Q  194 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 293  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4345370 tgttggacatggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgttagttgcttgcttg 4345469  T
Q  294 agtttgtccatcgaatatat 313  Q
    ||||||||||||||||||||    
T  4345470 agtttgtccatcgaatatat 4345489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 4344319 - 4344370
Alignment:
Q  62 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 113  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  4344319 aattaagaagtaatctaggaagtaccagtaactttgaagtattgttatgttt 4344370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 46406886 - 46406948
Alignment:
Q  210 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 272  Q
    ||||||||||| |||||||||||||| ||||||||  | || ||||| |||||| ||||||||    
T  46406886 ggtaatagaatgattcaagaaaggtttcaacactcgagtgagactgttagtagatgttttcat 46406948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 4344374 - 4344427
Alignment:
Q  142 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 195  Q
    |||| ||||| ||||||||||| |||||  |||||||||||||||||| |||||    
T  4344374 ctttcaattaggaagtaatctaagaagtggtagtaactatgaagtactcttatg 4344427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 20087600 - 20087759
Alignment:
Q  38 ggaattaagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttctg 137  Q
    |||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |    
T  20087600 ggaagtaagctaggaagtcttatgaattaagaagtaatctaggaagtactagtaactatgaagtactgttatatttagtctttaatgttgtaatgttccg 20087699  T
Q  138 ttgtctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 197  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20087700 ttatctttaaattaagaagtaatctagaaagtactagtaactatgaagtactgttatgtt 20087759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 20087709 - 20087760
Alignment:
Q  62 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 113  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  20087709 aattaagaagtaatctagaaagtactagtaactatgaagtactgttatgttt 20087760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 20087764 - 20087817
Alignment:
Q  142 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 195  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  20087764 cttttaattaggaagtaatctaagaagtactagtaactatgaagtactattatg 20087817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 20087769 - 20087809
Alignment:
Q  62 aattaagaagtaatctatgaagtactagtaactatgaagta 102  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  20087769 aattaggaagtaatctaagaagtactagtaactatgaagta 20087809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 51 - 197
Target Start/End: Complemental strand, 23362651 - 23362505
Alignment:
Q  51 gaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttctgttgtctttaaatt 150  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23362651 gaagtactatgaattaagaagtaatctacgaagtactagtaactattaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaatt 23362552  T
Q  151 aagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 197  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  23362551 aagaagtaatctaggaagtactaataactatgaagtactgttatgtt 23362505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 194 - 313
Target Start/End: Complemental strand, 23361678 - 23361559
Alignment:
Q  194 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 293  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  23361678 tgttggacatggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgttagtttctttcttg 23361579  T
Q  294 agtttgtccatcgaatatat 313  Q
    ||||||||||||||||||||    
T  23361578 agtttgtccatcgaatatat 23361559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 23376355 - 23376313
Alignment:
Q  13 gaacctgtgtgactaggatgtgatgggaattaagctaggaagt 55  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23376355 gaacctgtgtgactaggatgtgatgggaattaagctaggaagt 23376313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 23362555 - 23362504
Alignment:
Q  62 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 113  Q
    ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  23362555 aattaagaagtaatctaggaagtactaataactatgaagtactgttatgttt 23362504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 14036025 - 14036087
Alignment:
Q  210 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 272  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||| |||||||    
T  14036025 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcat 14036087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 13895398 - 13895460
Alignment:
Q  210 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 272  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||  |||||||    
T  13895398 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgttagtagatattttcat 13895460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 200862 - 200716
Alignment:
Q  43 taagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttctgttgtc 142  Q
    |||||||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  200862 taagctaggatgtactatgaattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc 200763  T
Q  143 tttaaattaagaagtaatctaggaagtactagtaactatgaagtact 189  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||    
T  200762 tttaaattaagaagtaatctaggaagtacctgtaactatgaagtact 200716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 200843 - 200793
Alignment:
Q  147 aattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 197  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  200843 aattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgtt 200793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 200901 - 200861
Alignment:
Q  38 ggaattaagctaggaagtattatgaattaagaagtaatcta 78  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  200901 ggaagtaagctaggaagtactatgaattaagaagtaatcta 200861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 200693 - 200640
Alignment:
Q  142 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 195  Q
    |||| ||||| ||| ||||||| ||||| ||||||||||||||||||| |||||    
T  200693 ctttcaattaggaattaatctaagaagtgctagtaactatgaagtactcttatg 200640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 194 - 313
Target Start/End: Original strand, 7011035 - 7011154
Alignment:
Q  194 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 293  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7011035 tgttggacatggagtgggtaataaaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgttagttgcttgcttg 7011134  T
Q  294 agtttgtccatcgaatatat 313  Q
    ||||||||||||||||||||    
T  7011135 agtttgtccatcgaatatat 7011154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 51126069 - 51126007
Alignment:
Q  210 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 272  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||| |||||||    
T  51126069 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcat 51126007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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