View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_high_13 (Length: 495)
Name: NF15705_high_13
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 81 - 309
Target Start/End: Original strand, 35254446 - 35254674
Alignment:
| Q |
81 |
ctgaattatccatattatataagaccaatgaaataatgcaaggagcatcaaagaaataaagatttttgggtaaaatgaattaagcagaagcatacacacc |
180 |
Q |
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| T |
35254446 |
ctgaattatccatattatataagaccaatgaaataatgcaaggagcatcaaagaaataaagatttttaggtaaaatgaattaagcagaagcatacacacc |
35254545 |
T |
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| Q |
181 |
agggggaaaatgtccggtaacatgagcttcattttttaaaatctcagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttgaaaa |
280 |
Q |
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| T |
35254546 |
agggggaaaatgtccggtaacatgagcttcatttttgaaaatctcagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttgaaaa |
35254645 |
T |
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| Q |
281 |
ctacaaagaacacacaggattcatattac |
309 |
Q |
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| T |
35254646 |
ctacaaagaacacacaggattcatattac |
35254674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 178 - 309
Target Start/End: Original strand, 35248045 - 35248176
Alignment:
| Q |
178 |
accagggggaaaatgtccggtaacatgagcttcattttttaaaatctcagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttga |
277 |
Q |
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||||||| ||| |||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
35248045 |
accagggagaatatgtccggaaactcgagcttcatttttgaaaatcttagcagtgtttgacaatcccttcttcttgaagtaatcacacagaaagttttga |
35248144 |
T |
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| Q |
278 |
aaactacaaagaacacacaggattcatattac |
309 |
Q |
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| T |
35248145 |
aaactacaaagaacacacaggattcgtattac |
35248176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 355 - 476
Target Start/End: Original strand, 35248218 - 35248348
Alignment:
| Q |
355 |
catgcatgcatgcagcattgtactctactcacagttcttcttttgggt---------ccatgttaaaggaaatggttgttgcacttagatgaagaagatg |
445 |
Q |
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| T |
35248218 |
catgcatgcatgcagcattgtactctactcacagttcttctttgggattttttgtatccatgttaaaggaaatggttcttgcacttagatgaagaagatg |
35248317 |
T |
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| Q |
446 |
attaatgaaagaaaatgaaaggagagaaagt |
476 |
Q |
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| T |
35248318 |
attaatgaaagaaaattaaaggagagaaagt |
35248348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 355 - 476
Target Start/End: Original strand, 35254716 - 35254846
Alignment:
| Q |
355 |
catgcatgcatgcagcattgtactctactcacagttcttcttttgggt---------ccatgttaaaggaaatggttgttgcacttagatgaagaagatg |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35254716 |
catgcatgcatgcagcattgtactctactcacagttcttctttgggattttttgtatccatgttaaaggaaatggttcttgcacttagatgaagaagatg |
35254815 |
T |
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| Q |
446 |
attaatgaaagaaaatgaaaggagagaaagt |
476 |
Q |
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| T |
35254816 |
attaatgaaagaaaataaaaggagagaaagt |
35254846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 296
Target Start/End: Original strand, 35272626 - 35272724
Alignment:
| Q |
198 |
taacatgagcttcattttttaaaatctcagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttgaaaactacaaagaacacaca |
296 |
Q |
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|||| ||||||||||||| ||||||| ||||| | | ||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |
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| T |
35272626 |
taacttgagcttcattttggaaaatctgtgcagtttccaagaatcctttcttcttgaggtaatcatgcagaaagatttgaaaactacacagaacacaca |
35272724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 35279400 - 35279442
Alignment:
| Q |
351 |
catgcatgcatgcatgcagcattgtactctactcacagttctt |
393 |
Q |
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| T |
35279400 |
catgcatgcatgcatgcagcattgtactctactcacagttctt |
35279442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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