View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15705_high_16 (Length: 453)

Name: NF15705_high_16
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15705_high_16
NF15705_high_16
[»] chr2 (10 HSPs)
chr2 (10-435)||(12053648-12054073)
chr2 (40-366)||(12074185-12074510)
chr2 (88-294)||(12075660-12075866)
chr2 (211-317)||(12058582-12058689)
chr2 (197-319)||(12046950-12047073)
chr2 (40-171)||(12062654-12062788)
chr2 (226-349)||(12066641-12066763)
chr2 (293-365)||(12051228-12051299)
chr2 (397-435)||(12066577-12066615)
chr2 (397-435)||(12074078-12074116)
[»] chr8 (1 HSPs)
chr8 (258-321)||(34583284-34583347)


Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 435
Target Start/End: Complemental strand, 12054073 - 12053648
Alignment:
Q  10 ggatcaaagttgtgatttctatnnnnnnnnttgaactttttaacctgtcaatgctactattccagatagcacccccaaaactacactaccgatcaaacga 109  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12054073 ggatcaaagttgtgatttctaaaaaaaaaattgaactttttaacctgtcaatgctactattccagatagcacccccagaactacactaccgatcaaacga 12053974  T
Q  110 taagtcggaaaagttggcagtttcgggggtgtggcactagaacagtgtcattgggacaggaataaccaatagacatctcagccaaattgcatttgttagt 209  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12053973 caagttggaaaagttggcagtttcgggggtgtggcactagaacagtgtcattgggacaggaataaccaatagacatctcagccaaattgcatttgttagt 12053874  T
Q  210 cattcacttgtcatctttatatagaaaaacttcacgtattatgtttctttgcaagcaatatgggcctaaaagccatatttatactctctactttcacacc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12053873 cattcacttgtcatctttatatagaaaaacttcacgtattatgtttctttgcaagcaatatgggactaaaagccatatttatactctctactttcacacc 12053774  T
Q  310 tcacttggcacttctagtaagatatcagtacgacttacttccaaattgcaatgttcttaagcctctagtatttcaaagaattgacgtataattgagatta 409  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12053773 tcacttggcacttctagtaagatatcagtcctacttacttccaaattgcaatgttcttaagcctctggtatttcaaagaattgacgtataattgagatta 12053674  T
Q  410 ttttcagacaactacttacataagat 435  Q
    ||||||||||||||||| ||||||||    
T  12053673 ttttcagacaactacttgcataagat 12053648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 40 - 366
Target Start/End: Complemental strand, 12074510 - 12074185
Alignment:
Q  40 ttgaactttttaacctgtcaatgctactattccagatag-cacccccaaaactacactaccgatcaaacgataagtcggaaaagttggcagtttcggggg 138  Q
    ||||||||||||| |||| |||||||||| || ||| |  |||| |   |||| ||||||| |||||| ||||||||||| ||||| | |||||| | ||    
T  12074510 ttgaactttttaaactgtgaatgctactactcaagaaactcaccactggaactccactaccaatcaaatgataagtcggagaagttagtagtttcagtgg 12074411  T
Q  139 tgtggcactagaacagtgtcattgggacaggaataaccaatagacatctcagccaaattgcatttgttagtcattcacttgtcatctttatatagaaaaa 238  Q
    |||||| || ||||||||||||| |||||||||||||||| ||||||||| | ||||||||| |||||||| ||||||||  |||| |||||||||| ||    
T  12074410 tgtggcccttgaacagtgtcattaggacaggaataaccaaaagacatctctgtcaaattgcaattgttagtaattcacttaccatc-ttatatagaacaa 12074312  T
Q  239 cttcacgtattatgtttctttgcaagcaatatgggcctaaaagccatatttatactctctactttcacacctcacttggcacttctagtaagatatcagt 338  Q
    |||||||| |||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| |||||| ||||||||    
T  12074311 cttcacgtgttatgtttctttcctagcaatatgggactaaaagccatatttttactctctactttcacacc-cacttggcacttgtagtaacatatcagt 12074213  T
Q  339 acgacttacttccaaattgcaatgttct 366  Q
    || |||||||||||||||||||||||||    
T  12074212 actacttacttccaaattgcaatgttct 12074185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 88 - 294
Target Start/End: Complemental strand, 12075866 - 12075660
Alignment:
Q  88 aactacactaccgatcaaacgataagtcggaaaagttggcagtttcgggggtgtggcactagaacagtgtcattgggacaggaataaccaatagacatct 187  Q
    ||||||| |||| |||||| |||||||| || ||||||| | |||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12075866 aactacattaccaatcaaatgataagtcagagaagttggtaatttcagcggtgtggcacttgaacagtgtcattgggacaggaataaccaatagacatct 12075767  T
Q  188 cagccaaattgcatttgttagtcattcacttgtcatctttatatagaaaaacttcacgtattatgtttctttgcaagcaatatgggcctaaaagccatat 287  Q
    | | ||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| || |||    
T  12075766 ctgtcaaattgcaattgttagtcattcatttgttatctttatatagaacaacttcacgtattatgtttctttgctagcaatatgggactaaaaaccctat 12075667  T
Q  288 ttatact 294  Q
    || ||||    
T  12075666 ttttact 12075660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 211 - 317
Target Start/End: Complemental strand, 12058689 - 12058582
Alignment:
Q  211 attcacttgtcatctttatatagaaaaacttcac--gtattatgtttctttgcaagcaatatgggcctaaaagccatatttatactctctactttcacac 308  Q
    ||||||||| |||||| ||||| || ||||||||  || |||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||||||    
T  12058689 attcacttgccatctt-atatataacaacttcacatgtgttatgtttctttgctagcaatatgggactaaaagccatatttacactgtctactttcacac 12058591  T
Q  309 ctcacttgg 317  Q
    |||||||||    
T  12058590 ctcacttgg 12058582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 319
Target Start/End: Complemental strand, 12047073 - 12046950
Alignment:
Q  197 tgcatttgttagtcattcacttgtcatctttatatagaaaaacttcac--gtattatgtttctttgcaagcaatatgggcctaaaagccatatttatact 294  Q
    |||| |||||||| |||||||||  ||||| ||||| || ||||||||  || |||| ||||||||| |||||| |||| ||||||||||| ||||||||    
T  12047073 tgcaattgttagtaattcacttgcaatctt-atatataacaacttcacatgtgttatttttctttgctagcaatgtgggactaaaagccatttttatact 12046975  T
Q  295 ctctactttcacacctcacttggca 319  Q
     |||||||||||||||| |||||||    
T  12046974 atctactttcacacctctcttggca 12046950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 171
Target Start/End: Complemental strand, 12062788 - 12062654
Alignment:
Q  40 ttgaactttttaacctgtcaatgctactattccagatagcaccccca----aaactacactaccgatcaaacgataagtcggaaaagttggcagtttcgg 135  Q
    |||||| |||||| |||||||||||||||||| ||| | || | |||    ||||||||| || ||||||| ||||||   || ||||||| |||||| |    
T  12062788 ttgaacattttaaactgtcaatgctactattc-agacaccatcaccacttgaaactacacaacggatcaaatgataaggtagagaagttggtagtttcag 12062690  T
Q  136 gggtgtggcactagaacagtgtcattgggacaggaa 171  Q
     ||||||||||| |||||||||||||||||||||||    
T  12062689 cggtgtggcacttgaacagtgtcattgggacaggaa 12062654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 349
Target Start/End: Complemental strand, 12066763 - 12066641
Alignment:
Q  226 ttatatagaaaaacttcac--gtattatgtttctttgcaagcaatatgggcctaaaagccatatttatactctctactttcacacctcacttggcacttc 323  Q
    |||||||||| ||||||||  || |||||||||||||  |||||| |||| ||||||||||| |||||||||   ||||| |||||||||||  |||||     
T  12066763 ttatatagaacaacttcacatgtgttatgtttctttggtagcaatgtgggactaaaagccat-tttatactca--acttttacacctcacttcacacttg 12066667  T
Q  324 tagtaagatatcagtacgacttactt 349  Q
    |||||| |||| ||||| ||||||||    
T  12066666 tagtaacatattagtactacttactt 12066641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 12051299 - 12051228
Alignment:
Q  293 ctctctactttcacacctcacttggcacttctagtaagatatcagtacgacttacttccaaattgcaatgttc 365  Q
    ||||| |||||||||||||| ||| ||| | |||||| |||||||||| | ||||||||||||||||||||||    
T  12051299 ctctcaactttcacacctcatttg-cacatgtagtaacatatcagtactatttacttccaaattgcaatgttc 12051228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 12066615 - 12066577
Alignment:
Q  397 ataattgagattattttcagacaactacttacataagat 435  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  12066615 ataattgagattattttcagacaactacttgtataagat 12066577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 12074116 - 12074078
Alignment:
Q  397 ataattgagattattttcagacaactacttacataagat 435  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  12074116 ataattaagattattttcagacaactacttatataagat 12074078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 34583284 - 34583347
Alignment:
Q  258 ttgcaagcaatatgggcctaaaagccatatttatactctctactttcacacctcacttggcact 321  Q
    |||| |||||| |||| || ||| |||||||| |||||||||||||||||||||||||| ||||    
T  34583284 ttgctagcaatgtgggacttaaaaccatatttctactctctactttcacacctcacttgccact 34583347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University