View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15705_high_2 (Length: 722)

Name: NF15705_high_2
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15705_high_2
NF15705_high_2
[»] chr7 (1 HSPs)
chr7 (21-710)||(43486655-43487348)


Alignment Details
Target: chr7 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 21 - 710
Target Start/End: Complemental strand, 43487348 - 43486655
Alignment:
Q  21 ttggcaacctattagcttgaaagatcctactgggttggtcatgaattttactcttaacatgaattatatacattatctatgctttagttctttaattagt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43487348 ttggcaacctattagcttgaaagatcctactgggttggtcatgaattttactcttaacatgaattatatacattatctatgctttagttctttaattagt 43487249  T
Q  121 ttatcatgttattaaacttttgcattttacaatagtcaagaattgtttgaggcagtagagcaagagagaaagtggagggttactccatcaaggaatattg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43487248 ttatcatgttattaaacttttgcattttacaatagtcaagaattgtttgaggcagtagagcaagagagaaagtggagggttactccatcaaggaatattg 43487149  T
Q  221 atatctttcatagccctactcttggaggttttggatttcaacatgtaagttatcacattctcgagtattcatttgtgtttcttacgttttaagcatgtca 320  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43487148 atatctttcatagcccgactcttggaggttttggatttcaacatgtaagttatcacattctcgagtattcatttgtgtttcttacgttttaagcatgtca 43487049  T
Q  321 taacaactagtttatgttgtcaatttttcgttcgacagctacacatgggcgtcaatggttcttctttagaagagagattgcttcaaaatttagcgattgt 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43487048 taacaactagtttatgttgtcaatttttcgttcgacagctacacatgggcgtcaatggttcttctttagaagagagattgcttcaaaatttagcgattgt 43486949  T
Q  421 tgcatcaattggaagaagaacacatcatgttggtcgaagggaaggacaacaaattcgaccatctggtcatgaaagagaagacaatctaaatgcaattcgt 520  Q
    ||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  43486948 tgcatcaatcg---gaagaacacatcatgttggtcgaagggaaggacaacaaattcgaccatctggtcatgaaagagaagacaatctaaatgcaattcat 43486852  T
Q  521 atgagcagtcaatctactccaataacatctagtgaagatgaaccattacaacaaatactaaaacgtcaaactgaaggttcctcaacttctcgatcaaccg 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43486851 atgagcagtcaatctactccaataacatctagtgaagatgaaccattacaacaaatactaaaacgtcaaactgaaggttcctcaacttctcgatcaaccg 43486752  T
Q  621 tcacggaaacaaacgaccaagatacttactccaatgataggtgg-------ttatgaacctatatttctattcgcaaaaattatcctcctctgtgct 710  Q
    ||||||||||||| |||||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  43486751 tcacggaaacaaatgaccaagaaacttactccaatgataggtggttatgatttatgaacctatatttctattcgcaaaaattatcctcctctgtgct 43486655  T

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