View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15705_high_24 (Length: 279)

Name: NF15705_high_24
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15705_high_24
NF15705_high_24
[»] chr5 (13 HSPs)
chr5 (11-236)||(41337480-41337705)
chr5 (24-243)||(41332666-41332885)
chr5 (36-243)||(41328733-41328940)
chr5 (38-243)||(41286859-41287063)
chr5 (11-206)||(31177912-31178107)
chr5 (36-243)||(41316692-41316899)
chr5 (11-205)||(31187975-31188169)
chr5 (38-188)||(41366900-41367050)
chr5 (6-243)||(41324756-41324993)
chr5 (38-169)||(41310967-41311102)
chr5 (38-183)||(41431967-41432112)
chr5 (55-215)||(31225599-31225759)
chr5 (93-190)||(14235865-14235962)
[»] chr4 (1 HSPs)
chr4 (15-233)||(17248796-17249014)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 41337705 - 41337480
Alignment:
Q  11 caaaggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337705 caaaggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatca 41337606  T
Q  111 aacactcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337605 aacactcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgc 41337506  T
Q  211 cagcaatgaacaagtcctgcaaatgg 236  Q
    ||||||||||||||||||||||||||    
T  41337505 cagcaatgaacaagtcctgcaaatgg 41337480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 243
Target Start/End: Complemental strand, 41332885 - 41332666
Alignment:
Q  24 ggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttctta 123  Q
    ||||||| ||| ||||||||||||| |||| ||||||||||| |||| || |||||||||| ||| || |||||||||||||||||||||||||||||||    
T  41332885 ggatgtaacctcaatgtttctttgacgacagactttaagtatatcaattggtgcaactctgactcatccacatacccctttttatcaaacactcttctta 41332786  T
Q  124 cctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaa 223  Q
    | ||||  ||||||||||||| |||  |||||||||||| |||||| ||||||||||||| ||  |   |||||||||||||| | |||||||||||||     
T  41332785 cttcaatctgtgcttcttccaatacctttgggttctttaccatctcagacatcgcccataacaatacctctgacgatgtttcggtaccagcaatgaacat 41332686  T
Q  224 gtcctgcaaatggaataaca 243  Q
     |||| |||||||| |||||    
T  41332685 atcctacaaatggattaaca 41332666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 36 - 243
Target Start/End: Complemental strand, 41328940 - 41328733
Alignment:
Q  36 aatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtg 135  Q
    |||||||||||||||||  ||||||||||| |||| || |||||||||||||| || |||||| ||||||||||||||||||| ||||| ||| ||||||    
T  41328940 aatgtttctttgatgacggactttaagtatatcaattggtgcaactctgtctcatccacatactcctttttatcaaacactctacttacttcatcttgtg 41328841  T
Q  136 cttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatg 235  Q
    |||||||||||||  |||||||||| | |||||| ||||||||||||| || ||    ||||||||||||| | ||||||| ||||| ||||| ||||||    
T  41328840 cttcttccattacctttgggttcttcaccatctcagacatcgcccataacagaacctgtgacgatgtttcggtaccagcaaggaacatgtcctacaaatg 41328741  T
Q  236 gaataaca 243  Q
    || |||||    
T  41328740 gattaaca 41328733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 38 - 243
Target Start/End: Complemental strand, 41287063 - 41286859
Alignment:
Q  38 tgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtgct 137  Q
    |||||||||||| ||| |||| |||||| |||| || ||||||||||||||  | |||||||||||| ||||||||||||||||||||||| ||||||||    
T  41287063 tgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcaaccacatacccctttctatcaaacactcttcttacctcagcttgtgct 41286964  T
Q  138 tcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatgga 237  Q
    | |||||| ||  |||| ||||||| |||||| |||||| | |||| ||||   ||||||||||||||||  |||||| ||||||||||||| |||||||    
T  41286963 t-ttccatcacctttggattctttaccatctcagacatccctcataacacagcccctgacgatgtttcgccaccagcagtgaacaagtcctgtaaatgga 41286865  T
Q  238 ataaca 243  Q
     |||||    
T  41286864 ttaaca 41286859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 31177912 - 31178107
Alignment:
Q  11 caaaggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatca 110  Q
    |||||||| || |||||| | ||| |||||||||||||| | | ||||||||||| |||| || ||||||||||| || || |||| |||||||||||||    
T  31177912 caaaggtaaagaaggatgcaaccttaatgtttctttgattatagactttaagtatatcaaatggtgcaactctgtttcatcgacatgcccctttttatca 31178011  T
Q  111 aacactcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcg 206  Q
    |||||| ||||||| ||| |||||||||| | |||||   ||||||||||||||||||| || ||| |||||| ||||| |||||| |||||||||    
T  31178012 aacacttttcttacttcagcttgtgcttccttcattatctttgggttctttatcatctcagatatcccccataacacaactcctgatgatgtttcg 31178107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 36 - 243
Target Start/End: Complemental strand, 41316899 - 41316692
Alignment:
Q  36 aatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtg 135  Q
    |||||||||||||||||| ||||||||||| |||| || | |||||||||||| || ||||| |||||||||||||||||||||||||| ||| ||||||    
T  41316899 aatgtttctttgatgacagactttaagtatatcaattggtacaactctgtctcatccacatatccctttttatcaaacactcttcttacttcagcttgtg 41316800  T
Q  136 cttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatg 235  Q
    ||| |||||||||  ||| ||| |||| |||| | ||||||||||| | ||||    |||||||||||||  | ||||||   |||| ||||||||||||    
T  41316799 cttgttccattacatttgagttttttaccatcgcagacatcgcccaaatcacagcctctgacgatgtttcagtaccagcaccaaacatgtcctgcaaatg 41316700  T
Q  236 gaataaca 243  Q
    || |||||    
T  41316699 gattaaca 41316692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 31187975 - 31188169
Alignment:
Q  11 caaaggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatca 110  Q
    |||||| |||| |||||||||||| ||||||||| |||| | | ||||||||||| |||| || ||||||||||| || || ||||||||||||||||||    
T  31187975 caaaggcacagaaggatgtagcctcaatgtttctctgattatagactttaagtatatcaattggtgcaactctgtttcatcgacatacccctttttatca 31188074  T
Q  111 aacactcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttc 205  Q
    |||||| ||||||| ||| |||||||||  |||||||   |||||||||||| |||||| || ||| |||||||||||   || |||||||||||    
T  31188075 aacacttttcttacttcagcttgtgctttctccattatctttgggttctttaccatctcagatatcccccatagcacagccccggacgatgtttc 31188169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 41367050 - 41366900
Alignment:
Q  38 tgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtgct 137  Q
    |||||||||||||||  | ||||||||| |||| || |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||    
T  41367050 tgtttctttgatgacggattttaagtatatcaattggtgcaactctgtctcattcacatatccctttttatcaaacactcttcttacctcaacttgtgct 41366951  T
Q  138 tcttccattactattgggttctttatcatctccgacatcgcccatagcaca 188  Q
     |||||||||| || || ||||||| |||||| ||||||| ||||| ||||    
T  41366950 gcttccattaccatcggattctttaccatctcagacatcgtccataacaca 41366900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 41324993 - 41324756
Alignment:
Q  6 agtagcaaaggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttt 105  Q
    |||| ||| ||||| || ||||||||||| | |||||| ||||| ||| | ||||||||| |||| || |||||||||||||| || ||| |||||||      
T  41324993 agtaacaacggtacggttggatgtagcctcattgtttccttgatcacagattttaagtatatcaattggtgcaactctgtctcatccacaaaccccttcc 41324894  T
Q  106 tatcaaacactcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttc 205  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||  |||| ||||||| |||||| || |||||||||| |||| |   ||||||||||||    
T  41324893 tatcaaaaactcttcttacctcagcttgtgcttcttccatcacctttggattctttaccatctcagatatcgcccataacacagtcgttgacgatgtttc 41324794  T
Q  206 gctgccagcaatgaacaagtcctgcaaatggaataaca 243  Q
    | | ||||||  ||| | ||||| |||||||| |||||    
T  41324793 ggtaccagcatcgaatatgtcctacaaatggattaaca 41324756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 41311102 - 41310967
Alignment:
Q  38 tgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtc----tacatacccctttttatcaaacactcttcttacctcaacttg 133  Q
    |||||||||||||||| ||||||||||| ||||| | ||||||||  |||| ||    || |||||||||||||||||||||||||||||| ||||||||    
T  41311102 tgtttctttgatgacaaactttaagtatatcaacaggtgcaactccatctcatccacatatatacccctttttatcaaacactcttcttacttcaacttg 41311003  T
Q  134 tgcttcttccattactattgggttctttatcatctc 169  Q
    |||||||||||||||  |||||||||||| ||||||    
T  41311002 tgcttcttccattacctttgggttctttaccatctc 41310967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 41432112 - 41431967
Alignment:
Q  38 tgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtgct 137  Q
    |||||||||||||| | |||| |||||| |||| |  |||||||| ||||| || |||||||| ||  ||||||||||||||||||||||| ||||||||    
T  41432112 tgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaacactcttcttacctcagcttgtgct 41432013  T
Q  138 tcttccattactattgggttctttatcatctccgacatcgcccata 183  Q
    |||||||| ||  | ||||||||   |||||| |||||||||||||    
T  41432012 tcttccatcacattcgggttcttcgccatctcagacatcgcccata 41431967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 215
Target Start/End: Complemental strand, 31225759 - 31225599
Alignment:
Q  55 actttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtgcttcttccattactattgg 154  Q
    ||||||||||| | || || ||||||||||| || || ||||  ||||||||||||||||   ||||||| ||| |||||||||| |||||||   ||||    
T  31225759 actttaagtatattaattggtgcaactctgtttcatcgacatgtccctttttatcaaacatgtttcttacttcagcttgtgcttcctccattatctttgg 31225660  T
Q  155 gttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagca 215  Q
    |||||||| |||||| || ||| |||||| |||||  ||||| || |||||||| ||||||    
T  31225659 gttctttaccatctcagatatcccccataacacaacccctgatgacgtttcgctaccagca 31225599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 14235962 - 14235865
Alignment:
Q  93 acatacccctttttatcaaacactcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaat 190  Q
    |||||||||||| |||||||| | |||||||||||| |||||||||||||||| ||  | ||||||||||  ||||| |||||| || ||| ||||||    
T  14235962 acatacccctttctatcaaactcccttcttacctcagcttgtgcttcttccatcaccctagggttctttacaatctcagacatccccaataacacaat 14235865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 17248796 - 17249014
Alignment:
Q  15 ggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaaca 114  Q
    |||||| ||||||| ||||| | |||||||||||||||| | ||||||||| | || || | |||||| || || ||||||||||||||| ||||||| |    
T  17248796 ggtacaataggatgcagcctcagtgtttctttgatgacagaatttaagtatattaattgatccaactccgtttcatctacatacccctttctatcaaaaa 17248895  T
Q  115 ctcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagc 214  Q
    | |||||||||||| |||||||| ||||||| ||  ||||||| ||||| ||||| |||||  |||||| |||||| || |||||||||||||| |||||    
T  17248896 cacttcttacctcagcttgtgctgcttccatcacctttgggttttttattatctcagacattccccataacacaatcccagacgatgtttcgctaccagc 17248995  T
Q  215 aatgaacaagtcctgcaaa 233  Q
    |   |||| ||||||||||    
T  17248996 agcaaacatgtcctgcaaa 17249014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University