View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_high_26 (Length: 249)
Name: NF15705_high_26
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 31882327 - 31882559
Alignment:
| Q |
1 |
tttagagaagcatttgaaagaaaactgcaagcacaaacacatggtgcttttgttgaacaagtgtgatctaattcctgcttgggcaactaaaggatggctt |
100 |
Q |
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| T |
31882327 |
tttagagaagcatttgaaagaaaactgcaagcacaaacacatggtgcttttgttgaacaagtgtgatctaattcctgcttgggcaacaaaaggatggctt |
31882426 |
T |
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| Q |
101 |
agggttttgtcaaaagaatatccaactctagcattccatgcaagcattaataagtcttttggaaagggttcgcttctatcggttttgagacaatttgcaa |
200 |
Q |
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| T |
31882427 |
agggttttgtcaaaggaatatccaactctagcattccatgcaagcattaataagtcttttggaaagggttcgcttctatcgattttgagacaatttgcaa |
31882526 |
T |
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| Q |
201 |
gattgaaaagcgataaacaagcaatatctgttg |
233 |
Q |
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| T |
31882527 |
gattgaaaagcgataaacaagcaatatctgttg |
31882559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 43154366 - 43154457
Alignment:
| Q |
76 |
tgcttgggcaactaaaggatggcttagggttttgtcaaaagaatatccaactctagcattccatgcaagcattaataagtcttttggaaagg |
167 |
Q |
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| T |
43154366 |
tgcttgggcaacaaaaggatatattagacttttgtcaaaagaatattcaacactagcattccatgcaagcataaataagtcctttgtaaagg |
43154457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 33479912 - 33479805
Alignment:
| Q |
60 |
agtgtgatctaattcctgcttgggcaactaaaggatggcttagggttttgtcaaaagaatatccaactctagcattccatgcaagcattaataagtcttt |
159 |
Q |
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| T |
33479912 |
agtgcgatctaattcctgcttgggcaacaaaaggatggcttagagttttgtcaaaagaatatccaacgctagcattccatgcaagtattaataagtcctt |
33479813 |
T |
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| Q |
160 |
tggaaagg |
167 |
Q |
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|||||||| |
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| T |
33479812 |
tggaaagg |
33479805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 33480077 - 33480017
Alignment:
| Q |
1 |
tttagagaagcatttgaaagaaaactgcaagcacaaacacatggtgcttttgttgaacaag |
61 |
Q |
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| T |
33480077 |
tttagagaagcatttgaaagaaaactgcaagcacaaacacatggtgcttttattgaacaag |
33480017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 33479633 - 33479565
Alignment:
| Q |
165 |
agggttcgcttctatcggttttgagacaatttgcaagattgaaaagcgataaacaagcaatatctgttg |
233 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
33479633 |
agggttcacttctatcggttctgagacaatttgcaagattgaaaagtgataagcaagcaatatctgttg |
33479565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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